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  5. AMTR_s00003p00184570

AMTR_s00003p00184570 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.161

Description : RNA biosynthesis.transcriptional activation.C2H2 zinc finger transcription factor


Gene families : OG0001832 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001832_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00184570

Target Alias Description ECC score Gene Family Method Actions
Adi_g021884 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g02045 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.02 OrthoFinder output from all 47 species
Cre12.g528400 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 OrthoFinder output from all 47 species
Cre17.g696300 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g09442 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g14529 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06114 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21758 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os05g19970.1 LOC_Os05g19970 C2H2 zinc finger transcription factor 0.04 OrthoFinder output from all 47 species
Ore_g17227 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10418 No alias E3 ubiquitin ligase *(SR1) & original description: none 0.03 OrthoFinder output from all 47 species
Smo437329 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 OrthoFinder output from all 47 species
Zm00001e000695_P002 Zm00001e000695 C2H2 zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!