- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.158
Description : Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00003p00181560 | |
| Cluster | HCCA: Cluster_78 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00003p00182540 | No alias | Pentatricopeptide repeat-containing protein At1g25360... | 0.04 | OrthoFinder output from all 47 species | |
| AMTR_s00003p00222920 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00029p00042600 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At2g33680... | 0.03 | OrthoFinder output from all 47 species | |
| AT3G24000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g034383 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g087380 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g03222 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g07519 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g23879 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g46291 | OTP86 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g34282 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g33592 | CRR22 | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0001.g000662 | No alias | not classified & original description: CDS=1-2844 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0001.g000793 | No alias | not classified & original description: CDS=1-2415 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0022.g016134 | OTP84 | not classified & original description: CDS=1-2358 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0069.g036581 | No alias | not classified & original description: CDS=1-1653 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0139.g051178 | No alias | not classified & original description: CDS=1-2667 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0652.g081079 | No alias | not classified & original description: CDS=1-2169 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g04634 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g06580 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g35115 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g36226 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.19G000700.1 | VAC1, ECB2,... | not classified & original description: pacid=50576122... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.29G017900.1 | Ceric.29G017900 | not classified & original description: pacid=50624370... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g30267 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g30474 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g22020 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g10023 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g12101 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g12147 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g14560 | OTP86 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g16902 | EMB2261 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g24725 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g26389 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01014727001 | No alias | Pentatricopeptide repeat-containing protein At4g21065... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01015468001 | No alias | Pentatricopeptide repeat-containing protein At1g31430... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01018597001 | No alias | RNA processing.organelle machineries.RNA... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01019408001 | No alias | Pentatricopeptide repeat-containing protein At4g21300... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01023860001 | REME1 | Pentatricopeptide repeat-containing protein At2g03880,... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01024915001 | No alias | Pentatricopeptide repeat-containing protein At5g16860... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01025569001 | No alias | Pentatricopeptide repeat-containing protein At5g66500,... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01028022001 | No alias | Pentatricopeptide repeat-containing protein At3g62890... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g17565 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Len_g18932 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g54485 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g07418 | EMB2758 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g12225 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_38395g0010 | CRR22 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.02 | OrthoFinder output from all 47 species | |
| MA_52613g0020 | No alias | Pentatricopeptide repeat-containing protein At4g33170... | 0.02 | OrthoFinder output from all 47 species | |
| MA_65500g0010 | No alias | Pentatricopeptide repeat-containing protein At1g08070,... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g41095 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g48712 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g27847 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g27204 | PTAC9, OSB2 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g34327 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g44735 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g34529 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g63869 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g16657 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g27073 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pp3c17_4940V3.1 | Pp3c17_4940 | organellar single-stranded DNA binding protein 3 | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g06616 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g21461 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Smo75659 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc01g097670.4.1 | EMB2261, Solyc01g097670 | RNA editing factor (ECD1) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc02g088650.1.1 | Solyc02g088650 | Pentatricopeptide repeat-containing protein At5g39350... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc04g016540.2.1 | Solyc04g016540 | Pentatricopeptide repeat-containing protein At2g39620... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc09g082170.4.1 | Solyc09g082170 | Pentatricopeptide repeat-containing protein At4g14820... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc09g082450.1.1 | Solyc09g082450 | RNA editing factor (YS1) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc11g008940.1.1 | CRR2, Solyc11g008940 | Pentatricopeptide repeat-containing protein At3g46790,... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g20180 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g23932 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g30543 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g32763 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g01122 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g35082 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e036537_P001 | Zm00001e036537 | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 219 | 262 |
| IPR002885 | Pentatricopeptide_repeat | 117 | 164 |
| IPR002885 | Pentatricopeptide_repeat | 86 | 113 |
| IPR002885 | Pentatricopeptide_repeat | 350 | 376 |
| IPR002885 | Pentatricopeptide_repeat | 186 | 214 |
| IPR002885 | Pentatricopeptide_repeat | 288 | 316 |
| IPR002885 | Pentatricopeptide_repeat | 318 | 346 |
| No external refs found! |