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  5. AMTR_s00003p00142040

AMTR_s00003p00142040 (TPR2,...)


Aliases : TPR2, evm_27.TU.AmTr_v1.0_scaffold00003.110

Description : RNA biosynthesis.transcriptional repression.TPL/TPR transcriptional co-repressor


Gene families : OG0000427 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000427_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00142040

Target Alias Description ECC score Gene Family Method Actions
Als_g43720 TPL, WSIP1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g24164 TPL, WSIP1 transcriptional co-repressor *(TPL/TPR) & original... 0.02 OrthoFinder output from all 47 species
Cba_g61200 TPL, WSIP1 transcriptional co-repressor *(TPL/TPR) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01015571001 WSIP2, TPR4 RNA biosynthesis.transcriptional repression.TPL/TPR... 0.03 OrthoFinder output from all 47 species
GSVIVT01017343001 WSIP2, TPR4 RNA biosynthesis.transcriptional repression.TPL/TPR... 0.02 OrthoFinder output from all 47 species
GSVIVT01035940001 TPR1 RNA biosynthesis.transcriptional repression.TPL/TPR... 0.02 OrthoFinder output from all 47 species
Gb_27991 TPR2 transcriptional repressor (TPL). transcriptional... 0.03 OrthoFinder output from all 47 species
MA_366520g0010 TPL, WSIP1 Protein TPR2 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Msp_g38873 TPR3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14256 TPL, WSIP1 transcriptional co-repressor *(TPL/TPR) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g12276 TPR1 transcriptional co-repressor *(TPL/TPR) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g29476 TPL, WSIP1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004827 TPL, WSIP1 transcriptional co-repressor *(TPL/TPR) & original... 0.03 OrthoFinder output from all 47 species
Tin_g06694 TPL, WSIP1 transcriptional co-repressor *(TPL/TPR) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e001080_P001 TPR1, Zm00001e001080 transcriptional repressor (TPL). transcriptional... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 156 190
IPR001680 WD40_repeat 618 655
IPR001680 WD40_repeat 53 82
IPR001680 WD40_repeat 195 232
No external refs found!