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  5. AMTR_s00003p00136650

AMTR_s00003p00136650 (LHCB1.5, LHB1B2,...)


Aliases : LHCB1.5, LHB1B2, evm_27.TU.AmTr_v1.0_scaffold00003.104

Description : Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.LHCb1/2/3-type component


Gene families : OG0000137 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000137_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00136650
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00069900 LHCB1.5, LHB1B2,... Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
Aop_g14415 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Aop_g18115 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Aop_g18116 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Aop_g22172 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene10234.t1 LHCB5, Aspi01Gene10234 component *(LHCb5) of LHC-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene23121.t1 LHCB2.3, LHCB2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene25498.t1 LHCB2.3, LHCB2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene28094.t1 LHCB2.2, LHCB2,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene44236.t1 LHCB2.3, LHCB2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene62745.t1 LHCB1.5, LHB1B2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene66566.t1 LHCB2.2, LHCB2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0042.g026913 LHCB3*1, LHCB3 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0052.g031519 LHCB1.3, CAB140,... component *(LHCb1/2/3) of LHC-II complex & original... 0.07 OrthoFinder output from all 47 species
Azfi_s1940.g108278 LHCB1.3, CAB140,... component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Cba_g04468 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g70411 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Dac_g32133 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Dde_g48076 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01028204001 LHCB1.5, LHB1B2 Chlorophyll a-b binding protein 16, chloroplastic... 0.05 OrthoFinder output from all 47 species
Gb_05853 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Gb_23732 LHCB1.5, LHB1B2 component LHCb1/2/3 of LHC-II complex 0.09 OrthoFinder output from all 47 species
LOC_Os01g41710.1 LHCB1.5, LHB1B2,... component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Len_g18196 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Len_g27642 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Len_g33043 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
MA_10431300g0020 LHCB2.2, LHCB2 component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
MA_9388552g0010 LHCB2.2, LHCB2 Chlorophyll a-b binding protein type 2 member 2... 0.04 OrthoFinder output from all 47 species
MA_97315g0010 LHCB1.5, LHB1B2 component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Mp7g05530.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Mp7g05980.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from all 47 species
Mp7g06750.1 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Ore_g21027 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Ore_g32299 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Ore_g35944 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g41462 LHCB3*1, LHCB3 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Pnu_g06072 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Solyc02g070980.1.1 LHCB1.3, CAB140,... component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Solyc02g070990.1.1 LHCB1.3, CAB140,... component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from all 47 species
Zm00001e020625_P001 LHCB1.5, LHB1B2,... Chlorophyll a-b binding protein 48, chloroplastic OS=Zea... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 29 195
No external refs found!