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  5. AMTR_s00003p00092110

AMTR_s00003p00092110 (AtSTS, STS,...)


Aliases : AtSTS, STS, evm_27.TU.AmTr_v1.0_scaffold00003.55

Description : Carbohydrate metabolism.raffinose family oligosaccharide biosynthesis.stachyose synthase


Gene families : OG0000999 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000999_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00092110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00091000 AtSTS, STS,... Carbohydrate metabolism.raffinose family oligosaccharide... 0.05 OrthoFinder output from all 47 species
AMTR_s00103p00156250 SIP2, AtSIP2,... Probable galactinol--sucrose galactosyltransferase 2... 0.05 OrthoFinder output from all 47 species
Aev_g21107 SIP2, AtSIP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g38472 SIP2, AtSIP2 alkaline alpha-galactosidase *(SIP2) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g17860 SIP2, AtSIP2 alkaline alpha-galactosidase *(SIP2) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g32731 SIP2, AtSIP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01005620001 SIP2, AtSIP2 Probable galactinol--sucrose galactosyltransferase 2... 0.03 OrthoFinder output from all 47 species
GSVIVT01032425001 SIP1 Protein degradation.peptidase families.aspartic-type... 0.04 OrthoFinder output from all 47 species
Gb_34624 DIN10 Probable galactinol--sucrose galactosyltransferase 2... 0.03 OrthoFinder output from all 47 species
LOC_Os03g59430.2 SIP2, AtSIP2,... raffinose alpha-galactosidase 0.02 OrthoFinder output from all 47 species
LOC_Os08g38710.1 AtSIP1, SIP1,... galactinol-sucrose galactosyltransferase 0.02 OrthoFinder output from all 47 species
Len_g21491 SIP2, AtSIP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g19770.1 SIP2, AtSIP2 Probable galactinol--sucrose galactosyltransferase 2... 0.02 OrthoFinder output from all 47 species
Msp_g05372 SIP1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g16033 SIP2, AtSIP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g24999 SIP2, AtSIP2 alkaline alpha-galactosidase *(SIP2) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g079300.4.1 AtSTS, STS,... stachyose synthase 0.03 OrthoFinder output from all 47 species
Solyc02g086530.4.1 SIP1, Solyc02g086530 raffinose synthase 0.04 OrthoFinder output from all 47 species
Zm00001e006102_P003 SIP2, AtSIP2,... raffinose alpha-galactosidase 0.02 OrthoFinder output from all 47 species
Zm00001e031054_P001 DIN10, Zm00001e031054 galactinol-sucrose galactosyltransferase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004888 transmembrane signaling receptor activity IEP HCCA
MF GO:0004970 ionotropic glutamate receptor activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005230 extracellular ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0005231 excitatory extracellular ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0005234 extracellularly glutamate-gated ion channel activity IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0008066 glutamate receptor activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0015035 protein-disulfide reductase activity IEP HCCA
MF GO:0015036 disulfide oxidoreductase activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022824 transmitter-gated monoatomic ion channel activity IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022835 transmitter-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
CC GO:0030288 outer membrane-bounded periplasmic space IEP HCCA
MF GO:0030594 neurotransmitter receptor activity IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
CC GO:0042597 periplasmic space IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR008811 Glycosyl_hydrolases_36 24 847
No external refs found!