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  5. AMTR_s00002p00272080

AMTR_s00002p00272080 (PRCGB, PBD1,...)


Aliases : PRCGB, PBD1, evm_27.TU.AmTr_v1.0_scaffold00002.660

Description : Protein degradation.26S proteasome.20S core protease.beta-type subunits.beta type-4 component


Gene families : OG0004283 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004283_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00272080

Target Alias Description ECC score Gene Family Method Actions
Adi_g008050 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Aev_g00486 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Ala_g09690 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Aop_g00205 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Cba_g00483 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Ceric.27G023100.1 PRCGB, PBD1,... beta-type-4 component *(PBD) of 26S proteasome &... 0.08 OrthoFinder output from all 47 species
Cre14.g610950 PRCGB, PBD1 Protein degradation.26S proteasome.20S core... 0.04 OrthoFinder output from all 47 species
Dcu_g08528 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Dde_g00381 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Gb_19480 PRCGB, PBD1 Proteasome subunit beta type-2-A OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_19481 PRCGB, PBD1 Proteasome subunit beta type-2-A OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os03g48930.1 PRCGB, PBD1,... component beta type-4 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Len_g12839 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
MA_119122g0010 PBD2 Proteasome subunit beta type-2-B OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp4g04320.1 PRCGB, PBD1 component beta type-4 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Msp_g00339 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Pp3c20_18180V3.1 PRCGB, PBD1, Pp3c20_18180 20S proteasome beta subunit D1 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0132.g022151 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Solyc09g082320.3.1 PRCGB, PBD1,... component beta type-4 of 26S proteasome 0.02 OrthoFinder output from all 47 species
Spa_g25247 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Spa_g46825 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Tin_g04912 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Zm00001e005337_P001 PRCGB, PBD1,... component beta type-4 of 26S proteasome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 3 182
No external refs found!