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  5. AMTR_s00002p00270640

AMTR_s00002p00270640 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.592

Description : Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase


Gene families : OG0003404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003404_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00270640
Cluster HCCA: Cluster_96

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00055210 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectin lyase 0.04 OrthoFinder output from all 47 species
AMTR_s00019p00057300 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.04 OrthoFinder output from all 47 species
AMTR_s00019p00058670 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.04 OrthoFinder output from all 47 species
AMTR_s00019p00130680 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectin lyase 0.04 OrthoFinder output from all 47 species
AT1G02790 PGA4 polygalacturonase 4 0.11 OrthoFinder output from all 47 species
AT3G07820 No alias Pectin lyase-like superfamily protein 0.17 OrthoFinder output from all 47 species
AT3G07830 No alias Pectin lyase-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G07840 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G07850 No alias Pectin lyase-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT3G14040 No alias Pectin lyase-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT5G48140 No alias Pectin lyase-like superfamily protein 0.14 OrthoFinder output from all 47 species
GSVIVT01028044001 PGA4 Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana 0.19 OrthoFinder output from all 47 species
GSVIVT01030017001 No alias Polygalacturonase OS=Gossypium hirsutum 0.13 OrthoFinder output from all 47 species
GSVIVT01030018001 No alias Polygalacturonase OS=Nicotiana tabacum 0.03 OrthoFinder output from all 47 species
GSVIVT01030023001 No alias Polygalacturonase OS=Gossypium hirsutum 0.16 OrthoFinder output from all 47 species
GSVIVT01030030001 No alias Polygalacturonase OS=Gossypium hirsutum 0.09 OrthoFinder output from all 47 species
GSVIVT01030032001 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia 0.03 OrthoFinder output from all 47 species
GSVIVT01035103001 No alias Exopolygalacturonase (Fragment) OS=Platanus acerifolia 0.21 OrthoFinder output from all 47 species
LOC_Os01g33300.1 LOC_Os01g33300 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.16 OrthoFinder output from all 47 species
LOC_Os02g10300.1 LOC_Os02g10300 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.11 OrthoFinder output from all 47 species
LOC_Os06g35320.1 LOC_Os06g35320 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.08 OrthoFinder output from all 47 species
LOC_Os06g40890.1 LOC_Os06g40890 Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.11 OrthoFinder output from all 47 species
Solyc01g066070.3.1 Solyc01g066070 Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.15 OrthoFinder output from all 47 species
Solyc06g009200.3.1 PGA4, Solyc06g009200 Polygalacturonase OS=Nicotiana tabacum... 0.14 OrthoFinder output from all 47 species
Solyc07g044870.4.1 Solyc07g044870 Polygalacturonase OS=Nicotiana tabacum... 0.05 OrthoFinder output from all 47 species
Solyc12g006293.1.1 Solyc12g006293 Polygalacturonase OS=Nicotiana tabacum... 0.04 OrthoFinder output from all 47 species
Solyc12g006313.1.1 Solyc12g006313 Polygalacturonase OS=Nicotiana tabacum... 0.04 OrthoFinder output from all 47 species
Zm00001e002846_P002 Zm00001e002846 Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.04 OrthoFinder output from all 47 species
Zm00001e017747_P001 Zm00001e017747 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.03 OrthoFinder output from all 47 species
Zm00001e022246_P002 Zm00001e022246 Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.06 OrthoFinder output from all 47 species
Zm00001e025021_P003 Zm00001e025021 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.13 OrthoFinder output from all 47 species
Zm00001e026354_P001 Zm00001e026354 Exopolygalacturonase OS=Zea mays (sp|p35339|pglr3_maize... 0.05 OrthoFinder output from all 47 species
Zm00001e030529_P001 Zm00001e030529 Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.04 OrthoFinder output from all 47 species
Zm00001e030530_P001 Zm00001e030530 Exopolygalacturonase OS=Zea mays (sp|p26216|pglr1_maize... 0.06 OrthoFinder output from all 47 species
Zm00001e030532_P001 Zm00001e030532 Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize : 345.0) 0.05 OrthoFinder output from all 47 species
Zm00001e030542_P001 Zm00001e030542 Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.03 OrthoFinder output from all 47 species
Zm00001e042297_P001 PGA4, Zm00001e042297 Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005618 cell wall IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030570 pectate lyase activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 29 352
No external refs found!