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  5. AMTR_s00002p00268390

AMTR_s00002p00268390 (BGT, GCN5, HAG1,...)


Aliases : BGT, GCN5, HAG1, HAG01, HAT1, HAC3, evm_27.TU.AmTr_v1.0_scaffold00002.536

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.SAGA transcription co-activator complex.GCN5/ADA4 component


Gene families : OG0003993 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003993_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00268390
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001085.33 BGT, GCN5, HAG1,... Histone acetyltransferase GCN5 OS=Oryza sativa subsp. japonica 0.01 OrthoFinder output from all 47 species
Cre06.g256200 BGT, GCN5, HAG1,... RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Dcu_g03075 BGT, GCN5, HAG1,... component *(GCN5/ADA4) of SAGA transcription... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008080 N-acetyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR001487 Bromodomain 472 548
IPR000182 GNAT_dom 273 346
No external refs found!