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  5. AMTR_s00002p00267080

AMTR_s00002p00267080 (SLO1,...)


Aliases : SLO1, evm_27.TU.AmTr_v1.0_scaffold00002.517

Description : Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0021459 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0021459_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00267080
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AMTR_s01859p00006880 OTP81,... Pentatricopeptide repeat-containing protein At2g29760,... 0.03 OrthoFinder output from all 47 species
Solyc02g072010.3.1 Solyc02g072010 Pentatricopeptide repeat-containing protein At4g18840... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003989 acetyl-CoA carboxylase activity IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
CC GO:0009317 acetyl-CoA carboxylase complex IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016421 CoA carboxylase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 110 137
IPR002885 Pentatricopeptide_repeat 180 205
IPR002885 Pentatricopeptide_repeat 206 245
No external refs found!