AMTR_s00002p00264270 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.487

Description : Chromatin organisation.histones.H1 linker histone

Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00002p00264270

Target	Alias	Description	ECC score	Gene Family Method
Adi_g029498	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g052669	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g054553	No alias	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g087695	No alias	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g104846	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g116606	No alias	linker histone *(H1) & original description: none	0.01	OrthoFinder output from all 47 species
Aev_g31757	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g04558	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g06787	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g08116	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g36506	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g04785	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene23118.t1	Aspi01Gene23118	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene32583.t1	Aspi01Gene32583	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.05G101000.1	HIS1-3, Ceric.05G101000	linker histone *(H1) & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.12G013600.1	HIS1-3, Ceric.12G013600	linker histone *(H1) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.17G067800.1	HIS1-3, Ceric.17G067800	linker histone *(H1) & original description:...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020780.71	HIS1-3	No description available	0.01	OrthoFinder output from all 47 species
Cre13.g567450	HIS1-3	Chromatin organisation.histones.H1 linker histone	0.06	OrthoFinder output from all 47 species
Dac_g45518	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g00585	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g02558	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g29487	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g23302	No alias	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g05478	No alias	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g05502	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01018807001	HIS1-3	Chromatin organisation.histones.H1 linker histone	0.03	OrthoFinder output from all 47 species
Gb_02738	No alias	linker histone (H1)	0.08	OrthoFinder output from all 47 species
Gb_03348	HIS1-3	linker histone (H1)	0.07	OrthoFinder output from all 47 species
LOC_Os07g08710.1	LOC_Os07g08710	linker histone (H1)	0.03	OrthoFinder output from all 47 species
Len_g33989	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_102457g0010	No alias	linker histone (H1)	0.03	OrthoFinder output from all 47 species
MA_10436125g0020	ATTRB1, TRB1	linker histone (H1)	0.03	OrthoFinder output from all 47 species
MA_11231g0010	HIS1-3	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_500183g0010	HIS1-3	linker histone (H1)	0.04	OrthoFinder output from all 47 species
Nbi_g11329	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g28209	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g59703	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g11041	No alias	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g11042	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc09g066100.3.1	Solyc09g066100	linker histone (H1)	0.09	OrthoFinder output from all 47 species
Solyc09g083380.4.1	Solyc09g083380	linker histone (H1)	0.05	OrthoFinder output from all 47 species
Spa_g09322	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g18792	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g31027	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g50934	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e007189_P001	HIS1-3, Zm00001e007189	linker histone (H1)	0.1	OrthoFinder output from all 47 species
Zm00001e011857_P001	Zm00001e011857	linker histone (H1)	0.04	OrthoFinder output from all 47 species
Zm00001e011859_P001	Zm00001e011859	linker histone (H1)	0.09	OrthoFinder output from all 47 species
Zm00001e030798_P003	HON4, Zm00001e030798	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	48	117

External Links

No external refs found!

AMTR_s00002p00264270 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation