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  5. AMTR_s00002p00260810

AMTR_s00002p00260810 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.446

Description : DNA damage-binding protein 1 OS=Oryza sativa subsp. japonica


Gene families : OG0005770 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005770_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00260810

Target Alias Description ECC score Gene Family Method Actions
AT3G11960 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.06 OrthoFinder output from all 47 species
Adi_g008160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g13991 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07804 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene11695.t1 Aspi01Gene11695 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene11696.t1 Aspi01Gene11696 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.37G065800.1 Ceric.37G065800 not classified & original description: pacid=50615955... 0.02 OrthoFinder output from all 47 species
Dcu_g10841 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g02452 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_129261g0030 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_20031g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ppi_g62455 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc10g080630.2.1 Solyc10g080630 Spliceosome-associated protein 130 A OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e033071_P001 Zm00001e033071 DNA damage-binding protein 1a OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004221 obsolete ubiquitin thiolesterase activity IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 965 1036
IPR004871 Cleavage/polyA-sp_fac_asu_C 1108 1353
No external refs found!