Sequence Description Alias PCC hrr AMTR_s00268p00016240 Protein modification.phosphorylation.atypical kinase families.PIKK kinase evm_27.TU.AmTr_v1.0_scaffold00268.6 0.9329846551455528 4 AMTR_s00022p00247220 Redox homeostasis.reactive oxygen generation.xanthine dehydrogenase ATXDH1, XDH1, evm_27.TU.AmTr_v1.0_scaffold00022.369 0.9312821401219955 2 AMTR_s00009p00067490 Pumilio homolog 1 OS=Arabidopsis thaliana PUM1, APUM1, evm_27.TU.AmTr_v1.0_scaffold00009.20 0.9267486695230905 3 AMTR_s00019p00148170 Vesicle trafficking.Coat protein II (COPII) coatomer machinery.Sec16 Sar1-GTPase-regulating protein evm_27.TU.AmTr_v1.0_scaffold00019.136 0.9241003393627744 23 AMTR_s00059p00210260 evm_27.TU.AmTr_v1.0_scaffold00059.244 0.9224369683416409 6 AMTR_s00048p00149840 Pentatricopeptide repeat-containing protein At2g38420, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00048.102 0.9193384031855762 39 AMTR_s00025p00031700 RNA biosynthesis.transcriptional activation.HB (Homeobox) superfamily.NDX transcription factor evm_27.TU.AmTr_v1.0_scaffold00025.12 0.9187398194508445 100 AMTR_s00082p00059940 Protein RST1 OS=Arabidopsis thaliana RST1, evm_27.TU.AmTr_v1.0_scaffold00082.4 0.9177349850290187 84 AMTR_s00024p00219730 E3 ubiquitin ligase PARAQUAT TOLERANCE 3 OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00024.212 0.9170900711078426 13 AMTR_s00020p00246930 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic subunits.subunit 2 NRPC2, evm_27.TU.AmTr_v1.0_scaffold00020.118 0.9168549644841407 54 AMTR_s00036p00227770 Protein translocation.chloroplast.outer envelope TOC translocation system.Toc90/Toc120/Toc132/Toc159 component evm_27.TU.AmTr_v1.0_scaffold00036.169 0.9157921949633921 12 AMTR_s00029p00079800 RNA biosynthesis.transcriptional activation.HUA2 transcription factor HUA2, evm_27.TU.AmTr_v1.0_scaffold00029.74 0.9144352870126938 13 AMTR_s00126p00106330 Vesicle trafficking.autophagosome formation.ATG9-2-18 membrane shuttling complex.ATG2 component ATATG2, ATG2, evm_27.TU.AmTr_v1.0_scaffold00126.49 0.910944002973123 73 AMTR_s00198p00028070 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.kinase module.MED13 component GCT, evm_27.TU.AmTr_v1.0_scaffold00198.5 0.9108539747213538 34 AMTR_s00042p00226140 evm_27.TU.AmTr_v1.0_scaffold00042.76 0.9106918948396536 32 AMTR_s00169p00051950 Protein modification.dephosphorylation.serine/threonine protein phosphatase superfamily.PPP Fe-Zn-dependent phosphatase families.PP2A phosphatase complexes.B-type regulatory component ATB BETA, evm_27.TU.AmTr_v1.0_scaffold00169.32 0.9104637168162739 31 AMTR_s00106p00133350 RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT1 component evm_27.TU.AmTr_v1.0_scaffold00106.104 0.9100148228292537 68 AMTR_s00010p00257770 evm_27.TU.AmTr_v1.0_scaffold00010.405 0.9097848406227796 20 AMTR_s00046p00089870 RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).PRPF8/SUS2 protein component EMB33, SUS2, EMB177, EMB14, evm_27.TU.AmTr_v1.0_scaffold00046.46 0.9088329993800744 86 AMTR_s00007p00201600 E3 ubiquitin-protein ligase listerin OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00007.177 0.907866628958801 81 AMTR_s00020p00108940 Protein degradation.peptidase families.cysteine-type peptidase activities.ubiquitin-specific protease UBP2, ATUBP2, evm_27.TU.AmTr_v1.0_scaffold00020.39 0.9071862369006873 24 AMTR_s00025p00127670 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-HCa-type E3 ligase DAL1, evm_27.TU.AmTr_v1.0_scaffold00025.120 0.9061357580928204 38 AMTR_s00110p00115240 External stimuli response.biotic stress.pathogen effector.NLR effector receptor 0.9060574887888522 39 AMTR_s01224p00002240 evm_27.TU.AmTr_v1.0_scaffold01224.1 0.9057190153591047 40 AMTR_s00040p00140300 evm_27.TU.AmTr_v1.0_scaffold00040.108 0.9021415765333598 30 AMTR_s00092p00062310 Coenzyme metabolism.NAD/NADP biosynthesis.NAD synthase evm_27.TU.AmTr_v1.0_scaffold00092.27 0.9006942607857708 93 AMTR_s00029p00083380 evm_27.TU.AmTr_v1.0_scaffold00029.77 0.8985937701446488 32 AMTR_s00074p00196560 Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00074.124 0.8985799361280742 65 AMTR_s00046p00223780 Protein degradation.peptidase families.metallopeptidase activities.M3 protease evm_27.TU.AmTr_v1.0_scaffold00046.160 0.898263217522868 47 AMTR_s00020p00187990 evm_27.TU.AmTr_v1.0_scaffold00020.72 0.8978715843331734 36 AMTR_s00032p00026180 RNA processing.RNA modification.thiolation.CTU1-URM1 pathway.sulfur carrier protein (MST/RDH) ATMST1, MST1, ATRDH1, STR1, ST1, evm_27.TU.AmTr_v1.0_scaffold00032.8 0.8966293517505937 38 AMTR_s00032p00122530 Phytohormones.abscisic acid.synthesis.ABA3 xanthoxin oxidase molybdenum cofactor sulfurase SIR3, ACI2, LOS5, ABA3, ATABA3, evm_27.TU.AmTr_v1.0_scaffold00032.85 0.8951992267650118 40 AMTR_s00060p00033670 Multi-process regulation.TOR signalling pathway.TORC complex.TOR kinase component TOR, evm_27.TU.AmTr_v1.0_scaffold00060.9 0.8947958532246247 99 AMTR_s00002p00266990 RNA biosynthesis.RNA polymerase II-dependent transcription.MEDIATOR transcription co-activator complex.tail module.MED14 component ATMED14, MED14, SWP, evm_27.TU.AmTr_v1.0_scaffold00002.516 0.8946147671396916 42 AMTR_s00005p00166730 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription termination.R-loop removal.type-1A topoisomerase TOP3b evm_27.TU.AmTr_v1.0_scaffold00005.51 0.8937776419852801 52 AMTR_s00048p00066880 Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana NHL8, evm_27.TU.AmTr_v1.0_scaffold00048.27 0.8926645447701606 46 AMTR_s00003p00213880 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase UPL6, evm_27.TU.AmTr_v1.0_scaffold00003.207 0.8917489865604928 98 AMTR_s00082p00164590 Vesicle trafficking.target membrane tethering.GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes.Syndetin-like EARP-specific component evm_27.TU.AmTr_v1.0_scaffold00082.39 0.8915560928469659 63 AMTR_s00016p00242080 Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Arabidopsis thaliana CRR28, evm_27.TU.AmTr_v1.0_scaffold00016.257 0.8903520801832946 52 AMTR_s00041p00140400 evm_27.TU.AmTr_v1.0_scaffold00041.99 0.8898510189850457 54 AMTR_s00024p00018300 RNA biosynthesis.transcriptional activation.FAR1 transcription factor FRS5, evm_27.TU.AmTr_v1.0_scaffold00024.4 0.8895964833264068 57 AMTR_s00030p00239430 Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00030.208 0.8893819163877034 66 AMTR_s00030p00200210 Vesicle trafficking.target membrane tethering.HOPS/CORVET membrane tethering complexes.VPS16/VCL1 component VCL1, EMB258, MAN, evm_27.TU.AmTr_v1.0_scaffold00030.138 0.8892960679456059 59 AMTR_s00078p00192630 evm_27.TU.AmTr_v1.0_scaffold00078.201 0.8889621998691651 80 AMTR_s00061p00109710 Proteasome activator subunit 4 OS=Arabidopsis thaliana PA200, evm_27.TU.AmTr_v1.0_scaffold00061.84 0.8885109630182717 61 AMTR_s00006p00237340 Solute transport.primary active transport.P-type ATPase superfamily.P1 family.HMA P1B-type heavy metal cation-transporting ATPase ATHMA1, HMA1, evm_27.TU.AmTr_v1.0_scaffold00006.110 0.8871779527584158 65 AMTR_s00089p00070210 Pentatricopeptide repeat-containing protein At5g15280, mitochondrial OS=Arabidopsis thaliana evm_27.TU.AmTr_v1.0_scaffold00089.28 0.8856584334930916 70 AMTR_s00061p00204480 Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase UPL1 0.8853355796287364 79 AMTR_s00159p00049090 evm_27.TU.AmTr_v1.0_scaffold00159.16 0.8850427037094546 74 AMTR_s00101p00125820 RNA biosynthesis.transcriptional activation.MYB superfamily.MYB-related transcription factor ATALY3, ALY3, evm_27.TU.AmTr_v1.0_scaffold00101.99 0.884861979645957 76 AMTR_s00053p00216170 evm_27.TU.AmTr_v1.0_scaffold00053.168 0.8837840772287128 77 AMTR_s00003p00175410 Phosphoinositide phosphatase SAC1 OS=Arabidopsis thaliana ATSAC1, evm_27.TU.AmTr_v1.0_scaffold00003.151 0.8837017021328947 79 AMTR_s00032p00061960 Protein modification.phosphorylation.CMGC kinase superfamily.cyclin-dependent kinase families.CDKC kinase CDKC;1, evm_27.TU.AmTr_v1.0_scaffold00032.39 0.8836975885966697 80 AMTR_s00025p00181800 Pumilio homolog 5 OS=Arabidopsis thaliana PUM5, APUM5, evm_27.TU.AmTr_v1.0_scaffold00025.219 0.8835405258619683 81 AMTR_s00099p00142540 Protein degradation.peptidase families.serine-type peptidase activities.mitochondrion Clp-type protease complex.ClpX chaperone component evm_27.TU.AmTr_v1.0_scaffold00099.130 0.8826244791734896 84 AMTR_s00110p00152340 Vesicle trafficking.target membrane tethering.TRAPP (Trafficking-Protein-Particle) complexes.TRAPP-II complex-specific components.TRS130/CLUB component CLUB, AtTRS130, evm_27.TU.AmTr_v1.0_scaffold00110.129 0.882140019344163 87 AMTR_s03799p00000720 evm_27.TU.AmTr_v1.0_scaffold03799.1 0.8816254172177828 89 AMTR_s00002p00069990 Protein modification.phosphorylation.CMGC kinase superfamily.cyclin-dependent kinase families.CDKE/CDK8 kinase CDKE;1, ATCDK8, HEN3, evm_27.TU.AmTr_v1.0_scaffold00002.34 0.8812517184432083 91 AMTR_s00009p00176380 Actin-related protein 9 OS=Oryza sativa subsp. indica ATARP9, ARP9, evm_27.TU.AmTr_v1.0_scaffold00009.107 0.8806949064628407 92 AMTR_s00048p00155800 Probable GTP diphosphokinase RSH3, chloroplastic OS=Arabidopsis thaliana RSH3, AT-RSH3, ATRSH3, evm_27.TU.AmTr_v1.0_scaffold00048.111 0.8802109709054143 94 AMTR_s00182p00016710 Chromatin organisation.histone modifications.histone lysine methylation/demethylation.AOD group histone demethylase activities.LDL3 lysine-specific demethylase LDL3, evm_27.TU.AmTr_v1.0_scaffold00182.5 0.8794474281486223 100