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  5. AMTR_s00002p00233660

AMTR_s00002p00233660 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.269

Description : GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0006792 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006792_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00233660
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AT5G57960 No alias GTP-binding protein, HflX 0.04 OrthoFinder output from all 47 species
Adi_g059600 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g03313 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16169 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g10418 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.34G037600.1 Ceric.34G037600 not classified & original description: pacid=50623913... 0.07 OrthoFinder output from all 47 species
Dac_g42859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g19282 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_27515 No alias component MED19 of head module of MEDIATOR transcription... 0.1 OrthoFinder output from all 47 species
LOC_Os11g38020.1 LOC_Os11g38020 GTP-binding protein At3g49725, chloroplastic... 0.09 OrthoFinder output from all 47 species
Lfl_g27465 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10437248g0010 No alias no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Mp8g01100.1 No alias GTP-binding protein At3g49725, chloroplastic... 0.04 OrthoFinder output from all 47 species
Msp_g06486 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g31437 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g48993 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g13180 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g64021 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g18146 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo77541 No alias GTP-binding protein At3g49725, chloroplastic... 0.04 OrthoFinder output from all 47 species
Solyc04g080770.3.1 Solyc04g080770 GTP-binding protein At3g49725, chloroplastic... 0.04 OrthoFinder output from all 47 species
Spa_g07834 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g29956 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e021243_P003 Zm00001e021243 GTP-binding protein At3g49725, chloroplastic... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0046490 isopentenyl diphosphate metabolic process IEP HCCA
MF GO:0050662 obsolete coenzyme binding IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR006073 GTP-bd 322 440
IPR025121 GTPase_HflX_N 143 234
No external refs found!