AMTR_s00002p00210720 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.217

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL19 component

Gene families : OG0002345 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002345_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00002p00210720

Target	Alias	Description	ECC score	Gene Family Method
AT4G17560	No alias	Ribosomal protein L19 family protein	0.08	OrthoFinder output from all 47 species
AT5G47190	No alias	Ribosomal protein L19 family protein	0.05	OrthoFinder output from all 47 species
Adi_g002310	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Adi_g008057	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aev_g45795	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Aob_g08190	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Aop_g12532	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aspi01Gene53327.t1	Aspi01Gene53327	component *(bL19c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Cba_g10751	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ceric.24G049700.1	Ceric.24G049700	component *(bL19c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cre17.g734450	No alias	50S ribosomal protein L19, chloroplastic OS=Mesostigma viride	0.03	OrthoFinder output from all 47 species
Dac_g03571	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Dcu_g09086	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Dde_g00499	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Ehy_g05444	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Ehy_g06479	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g13874	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01002112001	No alias	Protein biosynthesis.organelle translation...	0.07	OrthoFinder output from all 47 species
Gb_05695	No alias	component psRPL19 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
LOC_Os02g43600.1	LOC_Os02g43600	component psRPL19 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
Len_g08100	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Lfl_g33279	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
MA_947876g0010	No alias	50S ribosomal protein L19-1, chloroplastic...	0.06	OrthoFinder output from all 47 species
Mp3g02740.1	No alias	component mtRPL19 of large ribosomal subunit proteome....	0.06	OrthoFinder output from all 47 species
Msp_g09265	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Nbi_g00593	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ore_g04060	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pir_g02445	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012817	No alias	not classified & original description: CDS=1-963	0.06	OrthoFinder output from all 47 species
Sam_g17563	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Solyc08g078010.3.1	Solyc08g078010	component psRPL19 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species
Spa_g04552	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Tin_g01651	No alias	component *(bL19c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Zm00001e015296_P001	Zm00001e015296	component psRPL19 of large ribosomal subunit proteome	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
MF	GO:0016987	sigma factor activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
MF	GO:0050662	obsolete coenzyme binding	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001857	Ribosomal_L19	140	235

External Links

No external refs found!

AMTR_s00002p00210720 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation