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  5. AMTR_s00002p00206060

AMTR_s00002p00206060 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.205

Description : Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3d component


Gene families : OG0003519 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003519_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00206060

Target Alias Description ECC score Gene Family Method Actions
AT5G44320 No alias Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 0.03 OrthoFinder output from all 47 species
Adi_g086900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g116181 No alias component *(eIF3d) of eIF3 mRNA-to-PIC binding complex &... 0.04 OrthoFinder output from all 47 species
Aop_g02560 No alias component *(eIF3d) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000142.3 No alias Protein biosynthesis.translation... 0.03 OrthoFinder output from all 47 species
Cre05.g242300 No alias Protein biosynthesis.translation... 0.02 OrthoFinder output from all 47 species
Dac_g13013 No alias component *(eIF3d) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g09905 No alias component *(eIF3d) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01002790001 No alias Protein biosynthesis.translation... 0.03 OrthoFinder output from all 47 species
LOC_Os05g49150.1 LOC_Os05g49150 component eIF3d of eIF3 mRNA-to-PIC binding complex 0.04 OrthoFinder output from all 47 species
MA_63764g0010 No alias component eIF3d of eIF3 mRNA-to-PIC binding complex 0.03 OrthoFinder output from all 47 species
Mp4g09070.1 No alias component eIF3d of eIF3 mRNA-to-PIC binding complex 0.03 OrthoFinder output from all 47 species
Ore_g10940 No alias component *(eIF3d) of eIF3 mRNA-to-PIC binding complex &... 0.04 OrthoFinder output from all 47 species
Ore_g40662 No alias component *(eIF3d) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Pir_g09601 No alias component *(eIF3d) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Pnu_g13658 No alias component *(eIF3d) of eIF3 mRNA-to-PIC binding complex &... 0.04 OrthoFinder output from all 47 species
Pp3c13_8400V3.1 Pp3c13_8400 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 0.01 OrthoFinder output from all 47 species
Sam_g17060 No alias component *(eIF3d) of eIF3 mRNA-to-PIC binding complex &... 0.04 OrthoFinder output from all 47 species
Solyc02g078120.2.1 Solyc02g078120 component eIF3d of eIF3 mRNA-to-PIC binding complex 0.04 OrthoFinder output from all 47 species
Spa_g09748 No alias component *(eIF3d) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e020233_P001 Zm00001e020233 component eIF3d of eIF3 mRNA-to-PIC binding complex 0.03 OrthoFinder output from all 47 species
Zm00001e032448_P001 Zm00001e032448 component eIF3d of eIF3 mRNA-to-PIC binding complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
MF GO:0030955 potassium ion binding IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
MF GO:0031420 alkali metal ion binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR007783 eIF3d 1 506
No external refs found!