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  5. AMTR_s00002p00190720

AMTR_s00002p00190720 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.170

Description : Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00190720

Target Alias Description ECC score Gene Family Method Actions
Adi_g016255 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g114052 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g32967 PPR596 RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.31G052700.1 Ceric.31G052700 RNA editing factor *(POCO) & original description:... 0.02 OrthoFinder output from all 47 species
GSVIVT01018303001 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.06 OrthoFinder output from all 47 species
GSVIVT01020533001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.02 OrthoFinder output from all 47 species
Gb_03507 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.03 OrthoFinder output from all 47 species
Gb_14576 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.05 OrthoFinder output from all 47 species
Gb_38114 No alias RNA editing factor (POCO) 0.06 OrthoFinder output from all 47 species
LOC_Os02g55310.1 LOC_Os02g55310 Pentatricopeptide repeat-containing protein At5g27460... 0.02 OrthoFinder output from all 47 species
LOC_Os04g46010.1 LOC_Os04g46010 Pentatricopeptide repeat-containing protein At1g02150... 0.03 OrthoFinder output from all 47 species
Smo444770 No alias Pentatricopeptide repeat-containing protein At3g15590,... 0.02 OrthoFinder output from all 47 species
Solyc01g081320.4.1 Solyc01g081320 Pentatricopeptide repeat-containing protein At5g27460... 0.04 OrthoFinder output from all 47 species
Solyc01g089870.3.1 Solyc01g089870 Pentatricopeptide repeat-containing protein At1g02150... 0.05 OrthoFinder output from all 47 species
Tin_g37476 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e007372_P001 Zm00001e007372 Pentatricopeptide repeat-containing protein At1g02150... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004556 alpha-amylase activity IEP HCCA
MF GO:0004645 1,4-alpha-oligoglucan phosphorylase activity IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
MF GO:0008184 glycogen phosphorylase activity IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0016108 tetraterpenoid metabolic process IEP HCCA
BP GO:0016109 tetraterpenoid biosynthetic process IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
BP GO:0016116 carotenoid metabolic process IEP HCCA
BP GO:0016117 carotenoid biosynthetic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 162 189
IPR002885 Pentatricopeptide_repeat 240 266
No external refs found!