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  5. AMTR_s00001p00273090

AMTR_s00001p00273090 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.593

Description : Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana


Gene families : OG0005181 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005181_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00273090
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Als_g01167 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08795 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0149.g053145 No alias not classified & original description: CDS=1-2790 0.02 OrthoFinder output from all 47 species
Dcu_g07132 No alias group-II intron mitochondrial splicing factor *(MISF68)... 0.03 OrthoFinder output from all 47 species
Spa_g47367 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e003355_P001 Zm00001e003355 Pentatricopeptide repeat-containing protein At1g18900... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005665 RNA polymerase II, core complex IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 346 375
IPR002885 Pentatricopeptide_repeat 556 585
IPR002885 Pentatricopeptide_repeat 587 635
IPR002885 Pentatricopeptide_repeat 377 425
IPR002885 Pentatricopeptide_repeat 482 529
IPR002885 Pentatricopeptide_repeat 444 476
No external refs found!