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  5. AMTR_s00001p00272640

AMTR_s00001p00272640 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.548

Description : Ribulose bisphosphate carboxylase large chain OS=Nymphaea alba


Gene families : OG0002607 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002607_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00272640
Cluster HCCA: Cluster_121

Target Alias Description ECC score Gene Family Method Actions
ATCG00490 RBCL ribulose-bisphosphate carboxylases 0.13 OrthoFinder output from all 47 species
Aev_g01070 RBCL large subunit of ribulose-1,5-bisphosphat... 0.1 OrthoFinder output from all 47 species
Als_g11735 RBCL large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Cba_g06423 RBCL large subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Ceric.02G014200.1 RBCL, Ceric.02G014200 large subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Ceric.02G046100.1 RBCL, Ceric.02G046100 large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Ceric.11G074700.1 RBCL, Ceric.11G074700 not classified & original description: pacid=50596717... 0.02 OrthoFinder output from all 47 species
Ceric.11G075000.1 RBCL, Ceric.11G075000 not classified & original description: pacid=50595488... 0.03 OrthoFinder output from all 47 species
Ceric.16G059900.1 RBCL, Ceric.16G059900 not classified & original description: pacid=50589806... 0.03 OrthoFinder output from all 47 species
Ceric.1Z018000.1 RBCL, Ceric.1Z018000 not classified & original description: pacid=50586374... 0.03 OrthoFinder output from all 47 species
Ceric.1Z021900.1 RBCL, Ceric.1Z021900 large subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Ceric.1Z141800.1 RBCL, Ceric.1Z141800 large subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Ceric.1Z162100.1 RBCL, Ceric.1Z162100 large subunit of ribulose-1,5-bisphosphat... 0.01 OrthoFinder output from all 47 species
Ceric.29G033400.1 RBCL, Ceric.29G033400 large subunit of ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species
Ceric.35G017400.1 RBCL, Ceric.35G017400 not classified & original description: pacid=50581736... 0.05 OrthoFinder output from all 47 species
Ceric.38G006500.1 RBCL, Ceric.38G006500 large subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
Dcu_g16071 RBCL large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Dde_g00694 RBCL large subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
GSVIVT01013856001 RBCL Ribulose bisphosphate carboxylase large chain (Fragment)... 0.07 OrthoFinder output from all 47 species
GSVIVT01022403001 RBCL Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban 0.05 OrthoFinder output from all 47 species
Gb_07644 RBCL Ribulose bisphosphate carboxylase large chain... 0.06 OrthoFinder output from all 47 species
Gb_15502 RBCL Ribulose bisphosphate carboxylase large chain... 0.06 OrthoFinder output from all 47 species
Gb_18620 RBCL Ribulose bisphosphate carboxylase large chain... 0.02 OrthoFinder output from all 47 species
Gb_34523 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.04 OrthoFinder output from all 47 species
Gb_37464 RBCL Ribulose bisphosphate carboxylase large chain... 0.06 OrthoFinder output from all 47 species
LOC_Os01g58020.1 RBCL, LOC_Os01g58020 Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.11 OrthoFinder output from all 47 species
LOC_Os05g35330.1 RBCL, LOC_Os05g35330 Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.03 OrthoFinder output from all 47 species
LOC_Os10g21268.1 RBCL, LOC_Os10g21268 large subunit of ribulose-1,5-bisphosphat... 0.12 OrthoFinder output from all 47 species
LOC_Os11g32770.1 LOC_Os11g32770 Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.06 OrthoFinder output from all 47 species
LOC_Os12g10580.1 RBCL, LOC_Os12g10580 component psRPS15 of small ribosomal subunit proteome 0.11 OrthoFinder output from all 47 species
Len_g01809 RBCL large subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Lfl_g07296 RBCL large subunit of ribulose-1,5-bisphosphat... 0.1 OrthoFinder output from all 47 species
Mp3g01300.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g16802 RBCL large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Nbi_g02076 RBCL large subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Ore_g01544 RBCL large subunit of ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species
Pir_g10235 RBCL large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Pnu_g02095 RBCL large subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Ppi_g08990 RBCL large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002257 RBCL not classified & original description: CDS=1-450 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0313.g027218 RBCL not classified & original description: CDS=1-270 0.06 OrthoFinder output from all 47 species
Sam_g02085 No alias large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Smo137874 RBCL Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.1 OrthoFinder output from all 47 species
Solyc00g500063.1.1 RBCL, Solyc00g500063 large subunit of ribulose-1,5-bisphosphat... 0.1 OrthoFinder output from all 47 species
Solyc07g021200.1.1 RBCL, Solyc07g021200 Ribulose bisphosphate carboxylase large chain (Fragment)... 0.1 OrthoFinder output from all 47 species
Solyc12g062540.3.1 RBCL, Solyc12g062540 Ribulose bisphosphate carboxylase large chain (Fragment)... 0.01 OrthoFinder output from all 47 species
Solyc12g062550.1.1 RBCL, Solyc12g062550 Ribulose bisphosphate carboxylase large chain OS=Solanum... 0.01 OrthoFinder output from all 47 species
Solyc12g062560.1.1 RPOC1, Solyc12g062560 DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.04 OrthoFinder output from all 47 species
Spa_g17352 RBCL large subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Zm00001e002755_P001 RBCL, Zm00001e002755 Ribulose bisphosphate carboxylase large chain OS=Zea... 0.02 OrthoFinder output from all 47 species
Zm00001e031080_P001 RBCL, Zm00001e031080 Ribulose bisphosphate carboxylase large chain OS=Zea... 0.06 OrthoFinder output from all 47 species
Zm00001e042029_P001 RBCL, Zm00001e042029 large subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Zm00001e042051_P001 RBCL, Zm00001e042051 large subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Zm00001e042083_P001 RBCL, Zm00001e042083 large subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Zm00001e042095_P001 RBCL, Zm00001e042095 large subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Zm00001e042403_P001 RBCL, Zm00001e042403 large subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA Interproscan
BP GO:0015977 carbon fixation IEA Interproscan
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!