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  5. AMTR_s00001p00272380

AMTR_s00001p00272380 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.522

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase


Gene families : OG0000957 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000957_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00272380

Target Alias Description ECC score Gene Family Method Actions
Aev_g19306 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g38056 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04888 No alias not classified & original description: none 0.15 OrthoFinder output from all 47 species
Als_g57980 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g63256 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Aob_g33853 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0436.g069942 No alias not classified & original description: CDS=1-840 0.04 OrthoFinder output from all 47 species
Azfi_s3507.g115946 No alias not classified & original description: CDS=2-214 0.04 OrthoFinder output from all 47 species
Dcu_g20001 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g23290 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01037874001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Gb_25302 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os03g10890.1 LOC_Os03g10890 Probable E3 ubiquitin-protein ligase RHY1A... 0.03 OrthoFinder output from all 47 species
LOC_Os11g37230.1 LOC_Os11g37230 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g10635 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g15338 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g27907 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g07226 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g30129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37088 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Solyc01g107290.3.1 Solyc01g107290 Probable E3 ubiquitin-protein ligase RHY1A... 0.04 OrthoFinder output from all 47 species
Solyc07g007160.3.1 Solyc07g007160 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc07g007170.3.1 Solyc07g007170 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc07g007180.4.1 Solyc07g007180 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 226 270
No external refs found!