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  5. AMTR_s00001p00261430

AMTR_s00001p00261430 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.380

Description : Multi-process regulation.circadian clock.evening element regulation.REVEILLE clock factor


Gene families : OG0000435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000435_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00261430
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
Adi_g088112 RVE1 transcription factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g46995 No alias circadian clock factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g37981 RVE1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01893.t1 Aspi01Gene01893 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16812.t1 Aspi01Gene16812 transcription factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene31228.t1 RVE2, CIR1,... transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Cre06.g275350 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
Dac_g11557 No alias circadian clock factor *(REVEILLE) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g45184 No alias transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_28874 LHY1, LHY transcription factor (MYB-related). circadian clock core... 0.04 OrthoFinder output from all 47 species
LOC_Os01g06320.1 LOC_Os01g06320 transcription factor (MYB-related). REVEILLE circadian... 0.03 OrthoFinder output from all 47 species
LOC_Os02g46030.1 RVE1, LOC_Os02g46030 transcription factor (MYB-related) 0.02 OrthoFinder output from all 47 species
LOC_Os06g45840.1 LOC_Os06g45840 transcription factor (MYB-related). REVEILLE circadian... 0.03 OrthoFinder output from all 47 species
LOC_Os08g06110.3 LHY1, LHY, LOC_Os08g06110 transcription factor (MYB-related). circadian clock core... 0.03 OrthoFinder output from all 47 species
Msp_g14125 RVE2, CIR1 circadian clock core oscillator protein *(LHY/CCA1) &... 0.03 OrthoFinder output from all 47 species
Ore_g16771 No alias circadian clock factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g32161 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g42013 RVE2, CIR1 transcription factor *(REVEILLE) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e037757_P001 Zm00001e037757 transcription factor (MYB-related). REVEILLE circadian... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 30 74
No external refs found!