AMTR_s00001p00259120 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.365

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL5 component

Gene families : OG0007287 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007287_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00001p00259120
Cluster	HCCA: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
AT4G01310	No alias	Ribosomal L5P family protein	0.1	OrthoFinder output from all 47 species
Adi_g040703	No alias	component *(uL5c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aev_g08868	No alias	component *(uL5c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ala_g07051	No alias	component *(uL5c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Als_g00607	No alias	component *(uL5c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Aob_g01084	No alias	component *(uL5c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aop_g10101	No alias	component *(uL5c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aspi01Gene03148.t1	Aspi01Gene03148	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0114.g046128	No alias	component *(uL5c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ceric.16G001900.1	Ceric.16G001900	component *(uL5c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Dac_g11621	No alias	component *(uL5c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dcu_g18361	No alias	component *(uL5c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dde_g06048	No alias	component *(uL5c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ehy_g04389	No alias	component *(uL5c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01027006001	No alias	Protein biosynthesis.organelle translation...	0.07	OrthoFinder output from all 47 species
Gb_03076	No alias	component psRPL5 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
LOC_Os03g03360.1	LOC_Os03g03360	component psRPL5 of large ribosomal subunit proteome	0.1	OrthoFinder output from all 47 species
Len_g49952	No alias	component *(uL5c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Lfl_g01005	No alias	component *(uL5c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
MA_8012412g0010	No alias	50S ribosomal protein L5, chloroplastic OS=Spinacia...	0.04	OrthoFinder output from all 47 species
Mp1g19970.1	No alias	component psRPL5 of large ribosomal subunit proteome	0.11	OrthoFinder output from all 47 species
Msp_g12267	No alias	component *(uL5c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Nbi_g00386	No alias	component *(uL5c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ore_g17964	No alias	component *(uL5c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Pp3c1_25850V3.1	Pp3c1_25850	Ribosomal L5P family protein	0.03	OrthoFinder output from all 47 species
Pp3c2_17110V3.1	Pp3c2_17110	Ribosomal L5P family protein	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0125.g021655	No alias	component *(uL5c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Sam_g11515	No alias	component *(uL5c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Sam_g35847	No alias	component *(uL5c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Solyc09g007560.4.1	Solyc09g007560	component psRPL5 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Zm00001e000182_P001	Zm00001e000182	component psRPL5 of large ribosomal subunit proteome	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004109	coproporphyrinogen oxidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0004852	uroporphyrinogen-III synthase activity	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002132	Ribosomal_L5	79	135
IPR002132	Ribosomal_L5	139	232

External Links

No external refs found!

AMTR_s00001p00259120 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation