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  5. AMTR_s00001p00138080

AMTR_s00001p00138080 (EMB16, EMB2036, AKRP,...)


Aliases : EMB16, EMB2036, AKRP, evm_27.TU.AmTr_v1.0_scaffold00001.114

Description : Ankyrin repeat domain-containing protein, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0002523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00138080
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AT5G40160 EMB139, EMB506 Ankyrin repeat family protein 0.02 OrthoFinder output from all 47 species
Adi_g032639 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g10996 EMB139, EMB506 regulatory protein *(Emb506) of embryogenesis & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0212.g058202 No alias not classified & original description: CDS=359-1396 0.04 OrthoFinder output from all 47 species
Cba_g10009 EMB139, EMB506 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G110600.1 Ceric.02G110600 not classified & original description: pacid=50584977... 0.03 OrthoFinder output from all 47 species
Dde_g24387 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01005198001 EMB16, EMB2036, AKRP Ankyrin repeat domain-containing protein, chloroplastic... 0.07 OrthoFinder output from all 47 species
Len_g50367 EMB16, EMB2036, AKRP not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g18533 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g18957 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g41339 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010764 No alias not classified & original description: CDS=422-1504 0.03 OrthoFinder output from all 47 species
Sam_g52287 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc02g061820.4.1 EMB16, EMB2036,... Ankyrin repeat domain-containing protein, chloroplastic... 0.02 OrthoFinder output from all 47 species
Spa_g15917 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007154 cell communication IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009432 SOS response IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009991 response to extracellular stimulus IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0019203 carbohydrate phosphatase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0031668 cellular response to extracellular stimulus IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050308 sugar-phosphatase activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071496 cellular response to external stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR020683 DUF3447 387 450
IPR020683 DUF3447 298 384
No external refs found!