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Aliases : DSK2, evm_27.TU.AmTr_v1.0_scaffold00001.11
Description : Ubiquitin domain-containing protein DSK2a OS=Arabidopsis thaliana
Gene families : OG0001912 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001912_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00001p00026840 | |
| Cluster | HCCA: Cluster_109 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Adi_g117315 | DSK2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g07227 | No alias | ubiquitin-proteasome shuttle factor *(DSK2) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.21G029800.1 | DSK2, Ceric.21G029800 | ubiquitin-proteasome shuttle factor *(DSK2) & original... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01003843001 | DSK2 | Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01023890001 | DSK2 | Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01023891001 | DSK2 | Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
| Gb_09865 | DSK2 | autophagic adaptor protein (DSK2) | 0.02 | OrthoFinder output from all 47 species | |
| MA_10431966g0020 | XDH2, ATXDH2 | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| MA_39935g0010 | DSK2 | autophagic adaptor protein (DSK2) | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g16088 | DSK2 | ubiquitin-proteasome shuttle factor *(DSK2) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g23080 | DSK2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g13508 | DSK2 | ubiquitin-proteasome shuttle factor *(DSK2) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e038110_P003 | DSK2, Zm00001e038110 | autophagic adaptor protein (DSK2) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000626 | Ubiquitin-like_dom | 24 | 88 |
| No external refs found! |