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  5. Aev_g04880

Aev_g04880 (TTN8, ATSMC1, SMC1)


Aliases : TTN8, ATSMC1, SMC1

Description : component *(SMC1/TTN8) of cohesin regulator complex & original description: none


Gene families : OG0004293 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004293_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g04880

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00208430 TTN8, ATSMC1,... Cell cycle.mitosis and meiosis.sister chromatid... 0.02 OrthoFinder output from all 47 species
AMTR_s00047p00208850 TTN8, ATSMC1,... Cell cycle.mitosis and meiosis.sister chromatid... 0.02 OrthoFinder output from all 47 species
Adi_g010815 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Ala_g02668 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.04 OrthoFinder output from all 47 species
Als_g01964 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01028343001 TTN8, ATSMC1, SMC1 Cell cycle.mitosis and meiosis.sister chromatid... 0.02 OrthoFinder output from all 47 species
LOC_Os12g44390.1 TTN8, ATSMC1,... component SMC1/TTN8 of cohesin regulator complex 0.03 OrthoFinder output from all 47 species
MA_10429667g0010 TTN8, ATSMC1, SMC1 Structural maintenance of chromosomes protein 1... 0.03 OrthoFinder output from all 47 species
MA_15758g0010 TTN8, ATSMC1, SMC1 Structural maintenance of chromosomes protein 1... 0.04 OrthoFinder output from all 47 species
Msp_g15568 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Ppi_g01407 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012930 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Spa_g10305 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e003843_P001 TTN8, ATSMC1,... component SMC1/TTN8 of cohesin regulator complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0030955 potassium ion binding IEP HCCA
MF GO:0031420 alkali metal ion binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 10 1202
IPR010935 SMC_hinge 517 632
No external refs found!