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Aliases : PAT1
Description : GRAS-type transcription factor & original description: none
Gene families : OG0000550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000550_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00043p00136400 | PAT1,... | RNA biosynthesis.transcriptional activation.GRAS... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00088p00161000 | PAT1,... | RNA biosynthesis.transcriptional activation.GRAS... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00186p00018500 | SCL1,... | RNA biosynthesis.transcriptional activation.GRAS... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G50600 | SCL5 | scarecrow-like 5 | 0.03 | OrthoFinder output from all 47 species | |
| AT4G17230 | SCL13 | SCARECROW-like 13 | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g02325 | PAT1 | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g08305 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g14420 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g10196 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g10199 | PAT1 | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g12263 | PAT1 | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g17653 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g51666 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g05233 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g05274 | PAT1 | GRAS-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g01362 | PAT1 | GRAS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g26689 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g69531 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0084.g039020 | PAT1 | GRAS-type transcription factor & original description: CDS=1-2502 | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g22814 | PAT1 | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g00898 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g22968 | PAT1 | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g12997 | PAT1 | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g03424 | PAT1 | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g01366 | PAT1 | GRAS-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g08580 | PAT1 | GRAS-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01007007001 | SCL21 | RNA biosynthesis.transcriptional activation.GRAS... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01010007001 | SCL1 | RNA biosynthesis.transcriptional activation.GRAS... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01014570001 | PAT1 | RNA biosynthesis.transcriptional activation.GRAS... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01026482001 | SCL1 | RNA biosynthesis.transcriptional activation.GRAS... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01037777001 | PAT1 | RNA biosynthesis.transcriptional activation.GRAS... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os07g36170.2 | PAT1, LOC_Os07g36170 | transcription factor (GRAS) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os07g39470.1 | PAT1, LOC_Os07g39470 | transcription factor (GRAS) | 0.03 | OrthoFinder output from all 47 species | |
| Len_g12269 | PAT1 | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Len_g20939 | PAT1 | GRAS-type transcription factor & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Lfl_g18488 | PAT1 | GRAS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g28608 | PAT1 | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| MA_10432093g0010 | PAT1 | transcription factor (GRAS) | 0.02 | OrthoFinder output from all 47 species | |
| MA_8789384g0010 | SCL1 | transcription factor (GRAS) | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g27471 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g06251 | PAT1 | GRAS-type transcription factor & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Nbi_g10124 | PAT1 | GRAS-type transcription factor & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Nbi_g19162 | PAT1 | GRAS-type transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Nbi_g20339 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g10322 | PAT1 | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g36507 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g16566 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc04g064550.1.1 | SCL1, Solyc04g064550 | transcription factor (GRAS) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc05g054170.4.1 | SCL13, Solyc05g054170 | transcription factor (GRAS) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc06g035620.3.1 | PAT1, Solyc06g035620 | transcription factor (GRAS) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc07g063940.2.1 | PAT1, Solyc07g063940 | transcription factor (GRAS) | 0.03 | OrthoFinder output from all 47 species | |
| Solyc07g065270.1.1 | PAT1, Solyc07g065270 | transcription factor (GRAS) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc11g012510.3.1 | SCL13, Solyc11g012510 | transcription factor (GRAS) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc12g005340.3.1 | PAT1, Solyc12g005340 | transcription factor (GRAS) | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g07387 | PAT1 | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g15312 | PAT1 | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g23112 | PAT1 | GRAS-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g46955 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g14260 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g28749 | PAT1 | GRAS-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e010646_P001 | PAT1, Zm00001e010646 | transcription factor (GRAS) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| BP | GO:0006325 | chromatin organization | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0016043 | cellular component organization | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR005202 | TF_GRAS | 356 | 722 |
| No external refs found! |