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  5. Aev_g01581

Aev_g01581 (SFR6)


Aliases : SFR6

Description : component *(MED16) of tail module of MEDIATOR transcription co-activator complex & original description: none


Gene families : OG0004636 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004636_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g01581
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AT4G04920 SFR6 sensitive to freezing 6 0.03 OrthoFinder output from all 47 species
Ala_g22100 SFR6 component *(MED16) of tail module of MEDIATOR... 0.07 OrthoFinder output from all 47 species
Aop_g63638 SFR6 component *(MED16) of tail module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Ceric.22G016300.1 SFR6, Ceric.22G016300 component *(MED16) of tail module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
Ceric.22G020500.1 SFR6, Ceric.22G020500 component *(MED16) of tail module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Dde_g10197 SFR6 component *(MED16) of tail module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
GSVIVT01002029001 SFR6 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
GSVIVT01002224001 SFR6 RNA biosynthesis.RNA polymerase II-dependent... 0.04 OrthoFinder output from all 47 species
GSVIVT01004519001 No alias Mediator of RNA polymerase II transcription subunit 16... 0.03 OrthoFinder output from all 47 species
GSVIVT01004520001 SFR6 Mediator of RNA polymerase II transcription subunit 16... 0.03 OrthoFinder output from all 47 species
LOC_Os10g35560.1 SFR6, LOC_Os10g35560 component MED16 of tail module of MEDIATOR transcription... 0.04 OrthoFinder output from all 47 species
Lfl_g05714 SFR6 component *(MED16) of tail module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
MA_10435759g0010 SFR6 component MED16 of tail module of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Mp4g19580.1 SFR6 component MED16 of tail module of MEDIATOR transcription... 0.01 OrthoFinder output from all 47 species
Ppi_g02397 SFR6 component *(MED16) of tail module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Solyc02g078520.4.1 SFR6, Solyc02g078520 component MED16 of tail module of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Zm00001e004466_P003 SFR6, Zm00001e004466 component MED16 of tail module of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!