Zm00001d015893 (GRMZM2G029258)


Aliases : GRMZM2G029258

Description : 27.1 RNA.processing ATP-dependent RNA helicase, putative


Gene families : OG_01_0000259 (Gene family) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d015893
Cluster HCCA cluster: Cluster_307

Target Alias Description ECC score Gene Family Method Actions
AT1G26370 No alias RNA helicase family protein 0.03 Gene family
AT1G32490 ESP3, EMB2733 RNA helicase family protein 0.03 Gene family
AT3G26560 No alias ATP-dependent RNA helicase, putative 0.05 Gene family
AT5G13010 EMB3011 RNA helicase family protein 0.04 Gene family
Cpa|evm.model.tig00000842.2 No alias 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.02 Gene family
Cpa|evm.model.tig00000984.27 No alias 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.05 Gene family
Cpa|evm.model.tig00022075.25 No alias 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.01 Gene family
Cre07.g349100 No alias 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.05 Gene family
Cre08.g358563 No alias 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.01 Gene family
GSVIVT01007911001 No alias 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.02 Gene family
GSVIVT01029863001 No alias 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.07 Gene family
LOC_Os02g19860 Os02g0301500 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.05 Gene family
LOC_Os03g19960 Os03g0314100 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.02 Gene family
LOC_Os07g32430 Os07g0508000 27.1.2 RNA.processing.RNA helicase embryo defective 3011... 0.07 Gene family
LOC_Os11g20554 Os11g0310800 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.02 Gene family
MA_10435486g0020 No alias 27.1 RNA.processing ATP-dependent RNA helicase, putative 0.02 Gene family
Smo233605 PACid_15401686 27.1 RNA.processing ATP-dependent RNA helicase, putative... 0.02 Gene family
Smo82212 PACid_15409607 27.1.2 RNA.processing.RNA helicase Encodes a homolog of... 0.07 Gene family
Solyc01g079250.3.1 Solyc01g079250.3 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.02 Gene family
Solyc09g008120.3.1 Solyc09g008120.3 27.1.2 RNA.processing.RNA helicase RNA helicase family protein 0.03 Gene family
Solyc10g076910.2.1 Solyc10g076910.2 27.1.2 RNA.processing.RNA helicase embryo defective 3011... 0.08 Gene family

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan
MF GO:0005524 ATP binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001650 Helicase_C 781 913
IPR011709 DUF1605 1121 1196
IPR007502 Helicase-assoc_dom 975 1063
IPR003029 S1_domain 280 349
IPR011545 DEAD/DEAH_box_helicase_dom 589 739
No external refs found!