Dac_g23808


Description : not classified & original description: none


Gene families : OG0004023 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004023_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g23808

Target Alias Description ECC score Gene Family Method Actions
Ala_g08664 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g12875 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16234 CRM3, HCF152 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g10416 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g21149 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g05987 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g08020 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g15637 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene48572.t1 CRM3, HCF152,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g25946 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.23G078700.1 Ceric.23G078700 not classified & original description: pacid=50610433... 0.04 OrthoFinder output from all 47 species
Dcu_g15035 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09268 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g29928 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g14876 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g16749 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g01887 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g38642 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g06340 CRM3, HCF152 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08780 CRM3, HCF152 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g21700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14407 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g19507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g42843 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g15789 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g37245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40231 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo441948 No alias Pentatricopeptide repeat-containing protein At2g31400,... 0.02 OrthoFinder output from all 47 species
Spa_g08291 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g49332 CRM3, HCF152 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP HCCA
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0034311 diol metabolic process IEP HCCA
BP GO:0034312 diol biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
BP GO:0042559 pteridine-containing compound biosynthetic process IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046146 tetrahydrobiopterin metabolic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046173 polyol biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 284 327
IPR002885 Pentatricopeptide_repeat 438 459
IPR002885 Pentatricopeptide_repeat 544 570
IPR002885 Pentatricopeptide_repeat 470 518
No external refs found!