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  5. LOC_Os07g46590.1

LOC_Os07g46590.1


Description : chromatin remodeling factor (Chd1). component CHR5 of SAGA transcription co-activator complex


Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0006319 (LandPlants) Phylogenetic Tree(s): OG_02_0006319_tree ,
OG_03_0009471 (SeedPlants) Phylogenetic Tree(s): OG_03_0009471_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g46590.1
Cluster HCCA: Cluster_268

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00148p00090060 evm_27.TU.AmTr_v1... Helicase protein MOM1 OS=Arabidopsis thaliana 0.05 Archaeplastida
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.04 Archaeplastida
AT2G13370 CHR5 chromatin remodeling 5 0.04 Archaeplastida
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
AT2G46020 CHA2, CHR2, BRM, ATBRM transcription regulatory protein SNF2, putative 0.04 Archaeplastida
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.04 Archaeplastida
Cpa|evm.model.tig00000350.9 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Cpa|evm.model.tig00000802.67 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cpa|evm.model.tig00000983.26 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 Archaeplastida
Cpa|evm.model.tig00020848.66 No alias Probable helicase CHR10 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00020960.24 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre03.g179300 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Cre08.g377200 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.03 Archaeplastida
Cre09.g390000 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 Archaeplastida
Cre12.g537671 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01012117001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.07 Archaeplastida
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
GSVIVT01017820001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
GSVIVT01017821001 No alias No description available 0.06 Archaeplastida
GSVIVT01017921001 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
GSVIVT01018218001 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
GSVIVT01037235001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.06 Archaeplastida
Gb_05671 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Gb_15026 No alias chromatin remodeling factor (Alc) 0.02 Archaeplastida
Gb_16961 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
Gb_35181 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.05 Archaeplastida
MA_10436824g0010 No alias No annotation 0.03 Archaeplastida
MA_637555g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_8926002g0010 No alias Chromatin structure-remodeling complex protein SYD... 0.03 Archaeplastida
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Archaeplastida
Mp1g07380.1 No alias CHD3-type chromatin-remodeling factor CHR7... 0.02 Archaeplastida
Mp1g17010.1 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.03 Archaeplastida
Mp4g00040.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.04 Archaeplastida
Mp8g17660.1 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.04 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.03 Archaeplastida
Pp3c13_19680V3.1 No alias chromatin remodeling 4 0.03 Archaeplastida
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
Pp3c15_6140V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Archaeplastida
Pp3c17_19520V3.1 No alias chromatin remodeling 1 0.02 Archaeplastida
Pp3c18_19045V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.03 Archaeplastida
Pp3c21_10800V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Archaeplastida
Pp3c27_3890V3.1 No alias Homeotic gene regulator 0.05 Archaeplastida
Pp3c3_15820V3.1 No alias transcription regulatory protein SNF2, putative 0.02 Archaeplastida
Pp3c5_19940V3.1 No alias chromatin remodeling 5 0.03 Archaeplastida
Pp3c6_10390V3.1 No alias chromatin remodeling 5 0.04 Archaeplastida
Pp3c7_3340V3.1 No alias chromatin-remodeling protein 11 0.04 Archaeplastida
Smo130534 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo440203 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo440558 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.04 Archaeplastida
Solyc01g079690.4.1 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Solyc01g090650.1.1 No alias chromatin remodeling factor (Alc) 0.02 Archaeplastida
Solyc01g094800.4.1 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
Solyc02g068560.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.04 Archaeplastida
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
Solyc12g099910.2.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.06 Archaeplastida
Zm00001e010722_P005 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e010908_P001 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e013442_P001 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Zm00001e030969_P003 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
Zm00001e036737_P001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e040406_P002 No alias chromatin remodeling factor (Snf2) 0.02 Archaeplastida
AT2G13370 CHR5 chromatin remodeling 5 0.04 LandPlants
GSVIVT01037235001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.05 LandPlants
Gb_35181 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.04 LandPlants
Pp3c5_19940V3.1 No alias chromatin remodeling 5 0.02 LandPlants
Pp3c6_10390V3.1 No alias chromatin remodeling 5 0.04 LandPlants
Smo440815 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 LandPlants
Solyc12g099910.2.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.05 LandPlants
Zm00001e010908_P001 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana... 0.02 LandPlants
AT2G13370 CHR5 chromatin remodeling 5 0.04 SeedPlants
GSVIVT01037235001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 SeedPlants
Gb_35181 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.04 SeedPlants
Solyc12g099910.2.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.05 SeedPlants
Zm00001e010908_P001 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006338 chromatin remodeling IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR015195 SLIDE 594 656
IPR001650 Helicase_C 185 297
IPR000330 SNF2_dom 2 156
IPR025260 DUF4208 774 866
No external refs found!