Dac_g20944 (ARF16)

Aliases : ARF16

Description : ARF-type transcription factor & original description: none

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dac_g20944
Cluster	HCCA: Cluster_135

Target	Alias	Description	ECC score	Gene Family Method
AT4G23980	ARF9	auxin response factor 9	0.03	OrthoFinder output from all 47 species
Adi_g011925	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g054964	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g058500	ARF1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g084657	ARF19, IAA22, ARF11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g49574	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g07961	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g22072	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene38983.t1	ARF16, Aspi01Gene38983	ARF-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene55123.t1	ARF6, Aspi01Gene55123	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0065.g035933	ARF6	not classified & original description: CDS=1-678	0.03	OrthoFinder output from all 47 species
Azfi_s0065.g035934	No alias	not classified & original description: CDS=1-342	0.03	OrthoFinder output from all 47 species
Azfi_s0697.g082598	ARF16	ARF-type transcription factor & original description: CDS=1-2376	0.04	OrthoFinder output from all 47 species
Dcu_g17078	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g07024	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g12286	ARF10	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01015035001	ARF19, IAA22, ARF11	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
GSVIVT01035204001	ARF8, ATARF8	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Gb_02925	ARF19, IAA22, ARF11	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Len_g31364	ARF19, IAA22, ARF11	transcriptional repressor *(IAA/AUX) & original description: none	0.03	OrthoFinder output from all 47 species
Mp1g12750.1	ARF6	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018261	TIR5, MSG1,...	not classified & original description: CDS=484-2670	0.03	OrthoFinder output from all 47 species
Sam_g04406	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g40540	No alias	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Smo117217	ARF6	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Solyc05g047460.3.1	ARF19, IAA22,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Spa_g17172	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g56619	ARF6	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g10839	ARF1	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e016366_P002	ARF11, Zm00001e016366	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	120	221
IPR010525	ARF_dom	281	364

External Links

No external refs found!

Dac_g20944 (ARF16)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation