Dac_g20551 (PKR1, CHR4)

Aliases : PKR1, CHR4

Description : DNA helicase *(MOM1) & original description: none

Gene families : OG0004810 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004810_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dac_g20551
Cluster	HCCA: Cluster_163

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00148p00090060	MOM1, MOM,...	Helicase protein MOM1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AT1G08060	MOM1, MOM	ATP-dependent helicase family protein	0.04	OrthoFinder output from all 47 species
LOC_Os02g02050.1	MOM1, MOM, LOC_Os02g02050	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Lfl_g07857	PKR1, CHR4	DNA helicase *(MOM1) & original description: none	0.05	OrthoFinder output from all 47 species
MA_9572741g0010	ATMBD9, MBD9	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp1g07380.1	PKR2	CHD3-type chromatin-remodeling factor CHR7...	0.05	OrthoFinder output from all 47 species
Sam_g27616	No alias	DNA helicase *(MOM1) & original description: none	0.03	OrthoFinder output from all 47 species
Smo440558	PKL, GYM, CHR6,...	Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Solyc06g010240.3.1	MOM1, MOM, Solyc06g010240	Helicase protein MOM1 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Spa_g07008	PKR1, CHR4	DNA helicase *(MOM1) & original description: none	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0017069	snRNA binding	IEP	HCCA
MF	GO:0017070	U6 snRNA binding	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	920	1148
IPR001650	Helicase_C	1176	1292
IPR019787	Znf_PHD-finger	572	616

External Links

No external refs found!