Dac_g16717

Description : component *(SF3B3) of splicing factor 3B complex & original description: none

Gene families : OG0007395 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007395_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dac_g16717

Target	Alias	Description	ECC score	Gene Family Method
Ala_g02677	No alias	component *(SF3B3) of splicing factor 3B complex &...	0.03	OrthoFinder output from all 47 species
Ceric.26G015800.1	Ceric.26G015800	component *(SF3B3) of splicing factor 3B complex &...	0.04	OrthoFinder output from all 47 species
GSVIVT01005970001	No alias	RNA processing.RNA splicing.U2-type-intron-specific...	0.03	OrthoFinder output from all 47 species
Gb_38044	No alias	component SF3B3 of splicing factor 3B complex	0.03	OrthoFinder output from all 47 species
Pir_g12238	No alias	component *(SF3B3) of splicing factor 3B complex &...	0.02	OrthoFinder output from all 47 species
Ppi_g04707	No alias	component *(SF3B3) of splicing factor 3B complex &...	0.04	OrthoFinder output from all 47 species
Solyc04g010260.3.1	Solyc04g010260	component SF3B3 of splicing factor 3B complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018846	Cleavage/polyA-sp_fac_asu_N	75	589
IPR004871	Cleavage/polyA-sp_fac_asu_C	851	1170

External Links

No external refs found!