Dac_g14678 (NUA, AtTPR)

Aliases : NUA, AtTPR

Description : nucleoporin of nuclear pore complex *(NUA) & original description: none

Gene families : OG0003960 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003960_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dac_g14678
Cluster	HCCA: Cluster_117

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00077p00124730	NUA, AtTPR,...	Protein translocation.nucleus.nucleocytoplasmic...	0.03	OrthoFinder output from all 47 species
AT1G79280	NUA, AtTPR	nuclear pore anchor	0.04	OrthoFinder output from all 47 species
Adi_g055513	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.03	OrthoFinder output from all 47 species
Ala_g07174	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.03	OrthoFinder output from all 47 species
Aob_g26121	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.02	OrthoFinder output from all 47 species
Aop_g09061	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene40431.t1	NUA, AtTPR,...	nucleoporin of nuclear pore complex *(NUA) & original...	0.03	OrthoFinder output from all 47 species
Ceric.23G046200.1	NUA, AtTPR,...	nucleoporin of nuclear pore complex *(NUA) & original...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000404.46	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.04	OrthoFinder output from all 47 species
Dcu_g03218	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.03	OrthoFinder output from all 47 species
Dde_g09517	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g15153	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.05	OrthoFinder output from all 47 species
GSVIVT01036698001	NUA, AtTPR	Protein translocation.nucleus.nucleocytoplasmic...	0.03	OrthoFinder output from all 47 species
LOC_Os02g50790.2	LOC_Os02g50790	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os02g50799.1	NUA, AtTPR,...	NUA nucleoporin of nuclear pore complex	0.03	OrthoFinder output from all 47 species
Lfl_g03520	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.04	OrthoFinder output from all 47 species
MA_10435343g0040	NUA, AtTPR	NUA nucleoporin of nuclear pore complex	0.02	OrthoFinder output from all 47 species
Mp2g14600.1	NUA, AtTPR	NUA nucleoporin of nuclear pore complex	0.03	OrthoFinder output from all 47 species
Msp_g15712	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.04	OrthoFinder output from all 47 species
Ore_g18802	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.02	OrthoFinder output from all 47 species
Ppi_g44472	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.04	OrthoFinder output from all 47 species
Sam_g04166	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g18065	No alias	nucleoporin of nuclear pore complex *(NUA) & original...	0.03	OrthoFinder output from all 47 species
Smo444132	NUA, AtTPR	Protein translocation.nucleus.nucleocytoplasmic...	0.04	OrthoFinder output from all 47 species
Spa_g10543	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.04	OrthoFinder output from all 47 species
Tin_g12694	NUA, AtTPR	nucleoporin of nuclear pore complex *(NUA) & original...	0.04	OrthoFinder output from all 47 species
Zm00001e023916_P004	NUA, AtTPR,...	NUA nucleoporin of nuclear pore complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006606	protein import into nucleus	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034504	protein localization to nucleus	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051170	import into nucleus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0032784	regulation of DNA-templated transcription elongation	IEP	HCCA
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	HCCA
BP	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034243	regulation of transcription elongation by RNA polymerase II	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012929	TPR/MLP1	1064	1184

External Links

No external refs found!

Dac_g14678 (NUA, AtTPR)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation