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  5. Dac_g04724

Dac_g04724 (APUM2, PUM2)


Aliases : APUM2, PUM2

Description : not classified & original description: none


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g04724

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00251030 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT2G29190 APUM2, PUM2 pumilio 2 0.02 OrthoFinder output from all 47 species
Adi_g010436 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g081646 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g18472 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18146 APUM2, PUM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02392 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01029553001 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
MA_10159883g0010 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
MA_12280g0010 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_9025256g0010 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ppi_g36029 PUM1, APUM1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g12530 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15133 APUM2, PUM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e029661_P001 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006448 regulation of translational elongation IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0017182 peptidyl-diphthamide metabolic process IEP HCCA
BP GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018202 peptidyl-histidine modification IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
MF GO:0090560 2-(3-amino-3-carboxypropyl)histidine synthase activity IEP HCCA
BP GO:1900247 regulation of cytoplasmic translational elongation IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 355 734
IPR001313 Pumilio_RNA-bd_rpt 921 951
IPR001313 Pumilio_RNA-bd_rpt 883 918
IPR001313 Pumilio_RNA-bd_rpt 811 844
IPR001313 Pumilio_RNA-bd_rpt 1002 1031
IPR001313 Pumilio_RNA-bd_rpt 853 878
IPR001313 Pumilio_RNA-bd_rpt 956 989
IPR001313 Pumilio_RNA-bd_rpt 775 807
IPR001313 Pumilio_RNA-bd_rpt 739 773
No external refs found!