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  5. Dac_g04514

Dac_g04514 (ATVAMP721, VAMP7B,...)


Aliases : ATVAMP721, VAMP7B, VAMP721, AT VAMP7B

Description : R-type VAMP7-group component of SNARE longin membrane fusion complex & original description: none


Gene families : OG0000720 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000720_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g04514

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00148060 ATVAMP725,... Vesicle trafficking.SNARE target membrane recognition... 0.03 OrthoFinder output from all 47 species
Adi_g016973 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Aspi01Gene60344.t1 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.01 OrthoFinder output from all 47 species
Ceric.36G052600.1 ATVAMP725,... R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Ehy_g07426 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
GSVIVT01000524001 VAMP726, ATVAMP726 Vesicle trafficking.SNARE target membrane recognition... 0.02 OrthoFinder output from all 47 species
MA_92947g0030 VAMP726, ATVAMP726 VAMP7-type R-type SNARE longin protein 0.02 OrthoFinder output from all 47 species
MA_945343g0010 VAMP726, ATVAMP726 VAMP7-type R-type SNARE longin protein 0.01 OrthoFinder output from all 47 species
Nbi_g05177 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.04 OrthoFinder output from all 47 species
Ore_g01479 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Ore_g04687 VAMP727, ATVAMP727 R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Spa_g17472 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Tin_g00364 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.04 OrthoFinder output from all 47 species
Zm00001e003924_P002 VAMP727,... VAMP7-type R-type SNARE longin protein 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR010908 Longin_dom 32 110
IPR042855 V_SNARE_CC 129 215
No external refs found!