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  5. Dac_g04068

Dac_g04068 (CAB4, LHCA4)


Aliases : CAB4, LHCA4

Description : component *(LHCa4) of LHC-I complex & original description: none


Gene families : OG0000742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000742_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g04068
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00264770 CAB4, LHCA4,... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.11 OrthoFinder output from all 47 species
AMTR_s00013p00180670 LHCA2,... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.1 OrthoFinder output from all 47 species
AMTR_s00131p00114510 evm_27.TU.AmTr_v1... Photosystem I chlorophyll a/b-binding protein 6,... 0.15 OrthoFinder output from all 47 species
AT1G19150 LHCA2*1, LHCA6 photosystem I light harvesting complex gene 6 0.05 OrthoFinder output from all 47 species
AT1G45474 LHCA5 photosystem I light harvesting complex gene 5 0.03 OrthoFinder output from all 47 species
AT3G47470 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 0.18 OrthoFinder output from all 47 species
AT3G61470 LHCA2 photosystem I light harvesting complex gene 2 0.16 OrthoFinder output from all 47 species
Adi_g001938 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Adi_g113731 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.09 OrthoFinder output from all 47 species
Aev_g04468 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.14 OrthoFinder output from all 47 species
Aev_g05867 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Aev_g13249 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g00983 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.13 OrthoFinder output from all 47 species
Ala_g21633 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.18 OrthoFinder output from all 47 species
Als_g05433 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Als_g07082 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.14 OrthoFinder output from all 47 species
Als_g11618 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Als_g39064 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Aob_g02952 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Aob_g08832 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.14 OrthoFinder output from all 47 species
Aob_g10644 LHCA2 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g11303 LHCA2 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g12635 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.04 OrthoFinder output from all 47 species
Aob_g13294 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Aob_g17482 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g17797 LHCA2*1, LHCA6 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g18931 LHCA2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g01073 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g12147 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.2 OrthoFinder output from all 47 species
Aop_g13138 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.16 OrthoFinder output from all 47 species
Aop_g36261 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.14 OrthoFinder output from all 47 species
Aspi01Gene61720.t1 CAB4, LHCA4,... component *(LHCa4) of LHC-I complex & original description: none 0.11 OrthoFinder output from all 47 species
Aspi01Gene65950.t1 LHCA2, Aspi01Gene65950 component *(LHCa2) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Azfi_s0013.g013231 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original... 0.11 OrthoFinder output from all 47 species
Azfi_s0551.g076608 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.07 OrthoFinder output from all 47 species
Cba_g06305 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Cba_g15852 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g21696 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g36933 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.11 OrthoFinder output from all 47 species
Ceric.21G064400.1 CAB4, LHCA4,... component *(LHCa4) of LHC-I complex & original... 0.18 OrthoFinder output from all 47 species
Ceric.22G073900.1 LHCA2, Ceric.22G073900 component *(LHCa2) of LHC-I complex & original... 0.17 OrthoFinder output from all 47 species
Ceric.28G031700.1 LHCA2, Ceric.28G031700 component *(LHCa2) of LHC-I complex & original... 0.2 OrthoFinder output from all 47 species
Ceric.33G037200.1 CAB4, LHCA4,... component *(LHCa4) of LHC-I complex & original... 0.13 OrthoFinder output from all 47 species
Ceric.33G046000.1 CAB4, LHCA4,... component *(LHCa4) of LHC-I complex & original... 0.18 OrthoFinder output from all 47 species
Cre06.g272650 LHCA5 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.14 OrthoFinder output from all 47 species
Cre06.g278213 CAB4, LHCA4 Chlorophyll a-b binding protein P4, chloroplastic... 0.12 OrthoFinder output from all 47 species
Cre10.g425900 CAB4, LHCA4 Chlorophyll a-b binding protein 4, chloroplastic... 0.13 OrthoFinder output from all 47 species
Cre10.g452050 CAB4, LHCA4 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.12 OrthoFinder output from all 47 species
Cre16.g687900 LHCA5 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.13 OrthoFinder output from all 47 species
Dcu_g02371 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g03606 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g29671 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.19 OrthoFinder output from all 47 species
Dcu_g34548 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.18 OrthoFinder output from all 47 species
Dcu_g45197 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g02029 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Dde_g16731 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Ehy_g20973 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01007988001 CAB4, LHCA4 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.16 OrthoFinder output from all 47 species
GSVIVT01009498001 LHCA5 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 OrthoFinder output from all 47 species
GSVIVT01010483001 LHCA2 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.11 OrthoFinder output from all 47 species
GSVIVT01015045001 LHCA2*1, LHCA6 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 OrthoFinder output from all 47 species
Gb_08408 CAB4, LHCA4 component LHCa4 of LHC-I complex 0.14 OrthoFinder output from all 47 species
Gb_32082 LHCA2 component LHCa2 of LHC-I complex 0.14 OrthoFinder output from all 47 species
LOC_Os07g38960.1 LHCA2, LOC_Os07g38960 component LHCa2 of LHC-I complex 0.15 OrthoFinder output from all 47 species
LOC_Os08g33820.1 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.13 OrthoFinder output from all 47 species
LOC_Os09g26810.1 LOC_Os09g26810 component LHCa6 of LHC-I complex 0.02 OrthoFinder output from all 47 species
Len_g05165 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Len_g09864 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.09 OrthoFinder output from all 47 species
Len_g12015 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.15 OrthoFinder output from all 47 species
Len_g17260 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.11 OrthoFinder output from all 47 species
Lfl_g00790 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.09 OrthoFinder output from all 47 species
MA_65346g0010 CAB4, LHCA4 Chlorophyll a-b binding protein P4, chloroplastic... 0.13 OrthoFinder output from all 47 species
Mp3g07840.1 CAB4, LHCA4 component LHCa4 of LHC-I complex 0.16 OrthoFinder output from all 47 species
Mp8g13180.1 LHCA2 component LHCa2 of LHC-I complex 0.15 OrthoFinder output from all 47 species
Msp_g01556 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.11 OrthoFinder output from all 47 species
Msp_g04666 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.14 OrthoFinder output from all 47 species
Nbi_g00555 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.16 OrthoFinder output from all 47 species
Nbi_g05658 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g11030 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g16925 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07782 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.13 OrthoFinder output from all 47 species
Ore_g07783 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g43266 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.14 OrthoFinder output from all 47 species
Ore_g43267 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.09 OrthoFinder output from all 47 species
Pir_g15636 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g17334 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.11 OrthoFinder output from all 47 species
Pir_g19526 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.06 OrthoFinder output from all 47 species
Pir_g19768 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Pnu_g08290 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c20_23240V3.1 LHCA2, Pp3c20_23240 photosystem I light harvesting complex gene 2 0.08 OrthoFinder output from all 47 species
Ppi_g12016 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Ppi_g12622 LHCA2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18284 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Ppi_g49013 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g016013 LHCA2 component *(LHCa2) of LHC-I complex & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017225 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original... 0.07 OrthoFinder output from all 47 species
Sam_g10927 No alias component *(LHCa4) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Sam_g16961 No alias component *(LHCa4) of LHC-I complex & original description: none 0.12 OrthoFinder output from all 47 species
Sam_g40409 No alias component *(LHCa2) of LHC-I complex & original description: none 0.13 OrthoFinder output from all 47 species
Smo270427 CAB4, LHCA4 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.08 OrthoFinder output from all 47 species
Smo446130 LHCA2 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 OrthoFinder output from all 47 species
Solyc03g115900.4.1 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.2 OrthoFinder output from all 47 species
Solyc06g069730.3.1 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.15 OrthoFinder output from all 47 species
Solyc07g022900.4.1 LHCA5, Solyc07g022900 component LHCa5 of LHC-I complex 0.06 OrthoFinder output from all 47 species
Solyc10g006230.3.1 LHCA2, Solyc10g006230 component LHCa2 of LHC-I complex 0.14 OrthoFinder output from all 47 species
Solyc12g009200.2.1 LHCA2*1, LHCA6,... component LHCa6 of LHC-I complex 0.04 OrthoFinder output from all 47 species
Spa_g04945 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Spa_g04946 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.1 OrthoFinder output from all 47 species
Spa_g08046 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.03 OrthoFinder output from all 47 species
Spa_g16233 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g29531 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g04383 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.19 OrthoFinder output from all 47 species
Tin_g07098 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10537 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.19 OrthoFinder output from all 47 species
Zm00001e004129_P001 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.19 OrthoFinder output from all 47 species
Zm00001e009885_P001 LHCA2*1, LHCA6,... component LHCa6 of LHC-I complex 0.03 OrthoFinder output from all 47 species
Zm00001e015945_P001 LHCA5, Zm00001e015945 component LHCa5 of LHC-I complex 0.04 OrthoFinder output from all 47 species
Zm00001e022453_P001 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.17 OrthoFinder output from all 47 species
Zm00001e035349_P002 LHCA2, Zm00001e035349 component LHCa2 of LHC-I complex 0.17 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006817 phosphate ion transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008883 glutamyl-tRNA reductase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0010242 oxygen evolving activity IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 59 218
No external refs found!