Dac_g02387

Description : heavy chain of clathrin triskelion & original description: none

Gene families : OG0002108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dac_g02387
Cluster	HCCA: Cluster_125

Target	Alias	Description	ECC score	Gene Family Method
AT3G11130	No alias	Clathrin, heavy chain	0.02	OrthoFinder output from all 47 species
Cba_g27949	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g02059	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Gb_33029	No alias	Clathrin heavy chain 2 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Msp_g26122	No alias	heavy chain of clathrin triskelion & original description: none	0.04	OrthoFinder output from all 47 species
Smo149750	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.03	OrthoFinder output from all 47 species
Solyc06g051310.3.1	Solyc06g051310	heavy chain of clathrin triskelion	0.04	OrthoFinder output from all 47 species
Spa_g17793	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g08699	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e009296_P003	Zm00001e009296	heavy chain of clathrin triskelion	0.02	OrthoFinder output from all 47 species
Zm00001e039167_P001	Zm00001e039167	heavy chain of clathrin triskelion	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030118	clathrin coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030125	clathrin vesicle coat	None	Extended
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEA	Interproscan
CC	GO:0030132	clathrin coat of coated pit	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098797	plasma membrane protein complex	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030688	preribosome, small subunit precursor	IEP	HCCA
MF	GO:0032182	ubiquitin-like protein binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0043130	ubiquitin binding	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022365	Clathrin_H-chain_propeller_rpt	154	197
IPR000547	Clathrin_H-chain/VPS_repeat	1144	1281
IPR000547	Clathrin_H-chain/VPS_repeat	701	839
IPR000547	Clathrin_H-chain/VPS_repeat	993	1133
IPR000547	Clathrin_H-chain/VPS_repeat	1292	1431
IPR000547	Clathrin_H-chain/VPS_repeat	850	975
IPR000547	Clathrin_H-chain/VPS_repeat	1437	1579
IPR000547	Clathrin_H-chain/VPS_repeat	557	692
IPR015348	Clathrin_H-chain_linker_core	344	367

External Links

No external refs found!