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  5. Dac_g01704

Dac_g01704 (RH39)


Aliases : RH39

Description : 23S-rRNA maturation helicase *(RH39) & original description: none


Gene families : OG0007220 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007220_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g01704

Target Alias Description ECC score Gene Family Method Actions
Adi_g006743 RH39 23S-rRNA maturation helicase *(RH39) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15873 RH39 23S-rRNA maturation helicase *(RH39) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g38704 RH39 23S-rRNA maturation helicase *(RH39) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14534 RH39 23S-rRNA maturation helicase *(RH39) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g26028 No alias 23S-rRNA maturation helicase *(RH39) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e029916_P001 RH39, Zm00001e029916 DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP HCCA
BP GO:0000077 DNA damage checkpoint signaling IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0030896 checkpoint clamp complex IEP HCCA
BP GO:0031570 DNA integrity checkpoint signaling IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0042770 signal transduction in response to DNA damage IEP HCCA
BP GO:0045786 negative regulation of cell cycle IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901988 negative regulation of cell cycle phase transition IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 375 486
IPR011545 DEAD/DEAH_box_helicase_dom 156 339
No external refs found!