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  5. Cre17.g737250

Cre17.g737250 (CLO, GFA1, MEE5)


Aliases : CLO, GFA1, MEE5

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).SNU114/U5-116kDa snRNP component


Gene families : OG0005717 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005717_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre17.g737250
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00245240 CLO, GFA1, MEE5,... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
AT1G06220 CLO, GFA1, MEE5 Ribosomal protein S5/Elongation factor G/III/V family protein 0.02 OrthoFinder output from all 47 species
Aop_g09606 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.03 OrthoFinder output from all 47 species
Cba_g02713 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.02 OrthoFinder output from all 47 species
Ceric.11G055700.1 CLO, GFA1, MEE5,... component *(CLO/SNU114/MAC11) of MAC... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020904.68 CLO, GFA1, MEE5 110 kDa U5 small nuclear ribonucleoprotein component CLO... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020904.69 CLO, GFA1, MEE5 RNA processing.RNA splicing.U2-type-intron-specific... 0.06 OrthoFinder output from all 47 species
Dac_g05149 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.01 OrthoFinder output from all 47 species
Dcu_g06490 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.01 OrthoFinder output from all 47 species
Dde_g20963 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.02 OrthoFinder output from all 47 species
Ehy_g20814 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.01 OrthoFinder output from all 47 species
GSVIVT01012881001 CLO, GFA1, MEE5 RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Gb_08962 CLO, GFA1, MEE5 protein factor SNU114/U5-116kDa of U5 small nuclear... 0.04 OrthoFinder output from all 47 species
LOC_Os06g40600.1 CLO, GFA1, MEE5,... protein factor SNU114/U5-116kDa of U5 small nuclear... 0.04 OrthoFinder output from all 47 species
MA_10434191g0010 CLO, GFA1, MEE5 110 kDa U5 small nuclear ribonucleoprotein component CLO... 0.03 OrthoFinder output from all 47 species
MA_931263g0010 CLO, GFA1, MEE5 protein factor SNU114/U5-116kDa of U5 small nuclear... 0.04 OrthoFinder output from all 47 species
Mp8g11140.1 CLO, GFA1, MEE5 protein factor SNU114/U5-116kDa of U5 small nuclear... 0.03 OrthoFinder output from all 47 species
Pir_g10447 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.04 OrthoFinder output from all 47 species
Pnu_g08542 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.01 OrthoFinder output from all 47 species
Sam_g30417 No alias component *(CLO/SNU114/MAC11) of MAC... 0.02 OrthoFinder output from all 47 species
Sam_g30419 No alias component *(CLO/SNU114/MAC11) of MAC... 0.02 OrthoFinder output from all 47 species
Smo231460 CLO, GFA1, MEE5 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Solyc07g007210.3.1 CLO, GFA1, MEE5,... protein factor SNU114/U5-116kDa of U5 small nuclear... 0.09 OrthoFinder output from all 47 species
Spa_g01974 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.01 OrthoFinder output from all 47 species
Tin_g10992 CLO, GFA1, MEE5 component *(CLO/SNU114/MAC11) of MAC... 0.01 OrthoFinder output from all 47 species
Zm00001e037442_P001 CLO, GFA1, MEE5,... protein factor SNU114/U5-116kDa of U5 small nuclear... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
InterPro domains Description Start Stop
IPR005517 Transl_elong_EFG/EF2_IV 727 840
IPR000795 T_Tr_GTP-bd_dom 137 335
IPR000640 EFG_V-like 843 931
IPR004161 EFTu-like_2 509 582
IPR031950 EFTUD2_N 3 116
No external refs found!