1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre17.g724850

Cre17.g724850


Description : WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana


Gene families : OG0004386 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004386_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre17.g724850
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AT2G19540 No alias Transducin family protein / WD-40 repeat family protein 0.02 OrthoFinder output from all 47 species
Aop_g05856 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.03 OrthoFinder output from all 47 species
Azfi_s0043.g026948 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.06 OrthoFinder output from all 47 species
Ceric.22G078400.1 Ceric.22G078400 substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001493.9 No alias No description available 0.06 OrthoFinder output from all 47 species
GSVIVT01015210001 No alias WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana 0.09 OrthoFinder output from all 47 species
MA_10425957g0010 No alias Histone-binding protein MSI1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp4g21540.1 No alias Histone-binding protein MSI1 homolog OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
Ore_g43857 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.01 OrthoFinder output from all 47 species
Pp3c12_16950V3.1 Pp3c12_16950 Transducin family protein / WD-40 repeat family protein 0.02 OrthoFinder output from all 47 species
Solyc07g039200.4.1 Solyc07g039200 WD-40 repeat-containing protein MSI2 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Tin_g10958 No alias substrate adaptor *(HTD1/DWD1) of CUL4-based E3... 0.01 OrthoFinder output from all 47 species
Zm00001e027495_P001 Zm00001e027495 WD-40 repeat-containing protein MSI4 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 290 322
IPR001680 WD40_repeat 336 367
IPR022052 Histone-bd_RBBP4_N 50 115
No external refs found!