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  5. Cre17.g718300

Cre17.g718300


Description : E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana


Gene families : OG0002193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002193_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre17.g718300

Target Alias Description ECC score Gene Family Method Actions
Aob_g05747 No alias E3 ubiquitin ligase *(CHY) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51515.t1 Aspi01Gene51515 E3 ubiquitin ligase *(CHY) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g14262 No alias E3 ubiquitin ligase *(CHY) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G088000.1 Ceric.07G088000 E3 ubiquitin ligase *(CHY) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.12G031000.1 Ceric.12G031000 E3 ubiquitin ligase *(CHY) & original description:... 0.02 OrthoFinder output from all 47 species
Gb_15945 No alias E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g03230 No alias E3 ubiquitin ligase *(CHY) & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g03053 No alias E3 ubiquitin ligase *(CHY) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g084510.4.1 Solyc06g084510 E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR008913 Znf_CHY 86 167
IPR039512 RCHY1_zinc-ribbon 273 330
IPR027370 Znf-RING_euk 222 262
No external refs found!