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  5. Cre16.g686950

Cre16.g686950 (CTF18)


Aliases : CTF18

Description : Replication factor C subunit 1 OS=Oryza sativa subsp. japonica


Gene families : OG0003934 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003934_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g686950
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00076p00097050 CTF18,... Replication factor C subunit 1 OS=Arabidopsis thaliana 0.1 OrthoFinder output from all 47 species
AT1G04730 CTF18 P-loop containing nucleoside triphosphate hydrolases... 0.09 OrthoFinder output from all 47 species
Ceric.10G031900.1 CTF18, Ceric.10G031900 not classified & original description: pacid=50612692... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001333.30 CTF18 No description available 0.06 OrthoFinder output from all 47 species
Dcu_g36712 CTF18 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_20313 AMY3, ATAMY3 Alpha-amylase 3, chloroplastic OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Gb_40705 CTF18 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os03g15810.1 CTF18, LOC_Os03g15810 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Len_g09263 CTF18 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428330g0010 CTF18 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Mp2g16010.1 CTF18 Replication factor C subunit 1 OS=Oryza sativa subsp.... 0.06 OrthoFinder output from all 47 species
Nbi_g06869 CTF18 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007093 CTF18 not classified & original description: CDS=216-3029 0.02 OrthoFinder output from all 47 species
Sam_g39633 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc09g091650.3.1 CTF18, Solyc09g091650 Replication factor C subunit 1 OS=Oryza sativa subsp.... 0.1 OrthoFinder output from all 47 species
Tin_g01232 CTF18 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e001156_P001 CTF18, Zm00001e001156 Replication factor C subunit 1 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005664 nuclear origin of replication recognition complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 684 770
No external refs found!