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  5. Cre16.g683793

Cre16.g683793


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.PES-BOP1-WDR12 (PeBoW) complex.PES component


Gene families : OG0005537 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005537_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Cre16.g683793
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00157670 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder output from all 47 species
AT5G14520 No alias pescadillo-related 0.11 OrthoFinder output from all 47 species
Ala_g11973 No alias component *(PES) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.02 OrthoFinder output from all 47 species
Aop_g17990 No alias component *(PES) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.03 OrthoFinder output from all 47 species
Cba_g02685 No alias component *(PES) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.01 OrthoFinder output from all 47 species
Ceric.13G073400.1 Ceric.13G073400 component *(PES) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020961.62 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
Dcu_g11952 No alias component *(PES) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.06 OrthoFinder output from all 47 species
GSVIVT01032412001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
Gb_12407 No alias component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.05 OrthoFinder output from all 47 species
LOC_Os03g49210.1 LOC_Os03g49210 component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.08 OrthoFinder output from all 47 species
Lfl_g08387 No alias component *(PES) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.05 OrthoFinder output from all 47 species
Pir_g09592 No alias component *(PES) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.02 OrthoFinder output from all 47 species
Pp3c3_23250V3.1 Pp3c3_23250 pescadillo-related 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002821 No alias component *(PES) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.02 OrthoFinder output from all 47 species
Sam_g14567 No alias component *(PES) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.04 OrthoFinder output from all 47 species
Smo166421 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
Solyc07g047670.3.1 Solyc07g047670 component PES of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005730 nucleolus IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR010613 PES 7 263
No external refs found!