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  5. Cre16.g678050

Cre16.g678050


Description : RNA processing.RNA quality control Exon Junction complex (EJC).peripheral components.SRm160 component


Gene families : OG0003504 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003504_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g678050
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Adi_g019655 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057078 No alias component *(SRm160) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Azfi_s0020.g015359 No alias component *(SRm160) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Cba_g13410 No alias component *(SRm160) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ceric.1Z098000.1 Ceric.1Z098000 component *(SRm160) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Dac_g07102 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g46327 No alias component *(SRm160) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Gb_33063 No alias component SRm160 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Lfl_g10938 No alias component *(SRm160) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026743 No alias component *(SRm160) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Sam_g07002 No alias component *(SRm160) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Smo100233 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Solyc09g030390.3.1 Solyc09g030390 component SRm160 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Zm00001e001194_P001 Zm00001e001194 component SRm160 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0004864 protein phosphatase inhibitor activity IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019212 phosphatase inhibitor activity IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
BP GO:0043085 positive regulation of catalytic activity IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0044093 positive regulation of molecular function IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002483 PWI_dom 52 120
No external refs found!