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  5. Cre16.g656250

Cre16.g656250 (U1-70K, U1SNRNP)


Aliases : U1-70K, U1SNRNP

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).U1-70K snRNP component


Gene families : OG0003392 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003392_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g656250

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00067090 U1-70K, U1SNRNP,... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
AT3G50670 U1-70K, U1SNRNP U1 small nuclear ribonucleoprotein-70K 0.01 OrthoFinder output from all 47 species
Aop_g04623 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene26081.t2 U1-70K, U1SNRNP,... component *(U1-70K) of U1 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0390.g067692 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Azfi_s2260.g110011 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001333.27 U1-70K, U1SNRNP RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Dcu_g10772 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Dcu_g24491 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.01 OrthoFinder output from all 47 species
GSVIVT01018981001 U1-70K, U1SNRNP RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
LOC_Os10g02630.1 U1-70K, U1SNRNP,... component U1-70K of U1 small nuclear ribonucleoprotein... 0.02 OrthoFinder output from all 47 species
Len_g19673 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Mp1g03510.1 U1-70K, U1SNRNP component U1-70K of U1 small nuclear ribonucleoprotein... 0.01 OrthoFinder output from all 47 species
Pnu_g03596 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Pnu_g11483 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.05 OrthoFinder output from all 47 species
Smo154282 U1-70K, U1SNRNP RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
Smo58751 U1-70K, U1SNRNP RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Solyc02g085420.4.1 U1-70K, U1SNRNP,... component U1-70K of U1 small nuclear ribonucleoprotein... 0.04 OrthoFinder output from all 47 species
Spa_g56473 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Zm00001e012949_P002 U1-70K, U1SNRNP,... component U1-70K of U1 small nuclear ribonucleoprotein... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR022023 U1snRNP70_N 32 142
IPR000504 RRM_dom 153 221
No external refs found!