Cre16.g652550

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL24 component

Gene families : OG0006569 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006569_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre16.g652550
Cluster	HCCA: Cluster_54

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00098p00115780	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
AT5G54600	No alias	Translation protein SH3-like family protein	0.23	OrthoFinder output from all 47 species
Adi_g019582	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Als_g04734	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Aob_g39352	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aop_g00183	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Azfi_s0006.g010426	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Ceric.33G048800.1	Ceric.33G048800	component *(uL24c) of large plastid ribosomal-subunit...	0.2	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000455.16	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dac_g00331	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g00516	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ehy_g22263	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
GSVIVT01014572001	No alias	Protein biosynthesis.organelle translation...	0.09	OrthoFinder output from all 47 species
Gb_13209	No alias	50S ribosomal protein L24, chloroplastic OS=Spinacia...	0.07	OrthoFinder output from all 47 species
LOC_Os06g46930.1	LOC_Os06g46930	component psRPL24 of large ribosomal subunit proteome	0.2	OrthoFinder output from all 47 species
Len_g05147	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Lfl_g05272	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Mp3g07850.1	No alias	component psRPL24 of large ribosomal subunit proteome	0.27	OrthoFinder output from all 47 species
Msp_g18519	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Nbi_g00588	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Pir_g07148	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Pnu_g08885	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Pp3c15_17530V3.1	Pp3c15_17530	Translation protein SH3-like family protein	0.08	OrthoFinder output from all 47 species
Sacu_v1.1_s0071.g016787	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Sam_g08486	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Sam_g08487	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.14	OrthoFinder output from all 47 species
Smo230291	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Solyc07g063960.3.1	Solyc07g063960	component psRPL24 of large ribosomal subunit proteome	0.2	OrthoFinder output from all 47 species
Spa_g00224	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Tin_g02402	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Zm00001e013043_P001	Zm00001e013043	component psRPL24 of large ribosomal subunit proteome	0.15	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	HCCA
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0034311	diol metabolic process	IEP	HCCA
BP	GO:0034312	diol biosynthetic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003256	Ribosomal_L24	105	169
IPR005824	KOW	72	103

External Links

No external refs found!

Cre16.g652550

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation