- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
No description available
Gene families : OG0003579 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003579_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre14.g633400 | |
| Cluster | HCCA: Cluster_53 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Adi_g043683 | ROS3 | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Aop_g25283 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g10708 | ROS3 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g24419 | ROS3 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g48559 | ROS3 | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Gb_02299 | ROS3 | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os02g04560.1 | ROS3, LOC_Os02g04560 | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Mp4g19210.1 | ROS3 | no hits & (original description: none) | 0.07 | OrthoFinder output from all 47 species | |
| Msp_g27141 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0076.g017548 | ROS3 | not classified & original description: CDS=334-2010 | 0.02 | OrthoFinder output from all 47 species | |
| Smo402256 | ROS3 | No description available | 0.03 | OrthoFinder output from all 47 species | |
| Solyc07g042700.4.1 | ROS3, Solyc07g042700 | no hits & (original description: none) | 0.01 | OrthoFinder output from all 47 species | |
| Solyc07g042740.3.1 | ROS3, Solyc07g042740 | no hits & (original description: none) | 0.01 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| CC | GO:0005730 | nucleolus | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| MF | GO:0008134 | transcription factor binding | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 5 | 36 |
| No external refs found! |