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  5. Cre14.g632950

Cre14.g632950


Description : RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.NOT1 component


Gene families : OG0002046 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002046_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre14.g632950

Target Alias Description ECC score Gene Family Method Actions
AT1G02080 No alias transcription regulators 0.04 OrthoFinder output from all 47 species
Aev_g11138 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.01 OrthoFinder output from all 47 species
Ala_g12815 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Aob_g22134 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.01 OrthoFinder output from all 47 species
Aop_g06241 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.01 OrthoFinder output from all 47 species
Ceric.34G056500.1 Ceric.34G056500 scaffold component *(NOT1) of mRNA deadenylation... 0.05 OrthoFinder output from all 47 species
Ehy_g17663 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
GSVIVT01000874001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
GSVIVT01018178001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
Lfl_g10188 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
MA_42843g0010 No alias component NOT1 of mRNA deadenylation CCR4-NOT complex 0.04 OrthoFinder output from all 47 species
Ore_g16116 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.01 OrthoFinder output from all 47 species
Pnu_g13312 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0261.g026893 No alias scaffold component *(NOT1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Smo440060 No alias RNA processing.RNA decay.deadenylation-dependent... 0.02 OrthoFinder output from all 47 species
Zm00001e000031_P001 Zm00001e000031 component NOT1 of mRNA deadenylation CCR4-NOT complex 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR024557 CNOT1_dom_4 1210 1350
IPR032193 CNOT1_TTP_bind 454 623
IPR032194 CNOT1_HEAT 266 430
IPR007196 CCR4-Not_Not1_C 1919 2278
IPR032191 CNOT1_CAF1_bind 820 1039
No external refs found!