Cre14.g620350 (GCH, ATGCH, RFD1, ATRIBA1)

Aliases : GCH, ATGCH, RFD1, ATRIBA1

Description : Probable bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic OS=Oryza sativa subsp. japonica

Gene families : OG0001684 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001684_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre14.g620350

Target	Alias	Description	ECC score	Gene Family Method
AT5G59750	No alias	DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II	0.03	OrthoFinder output from all 47 species
Adi_g023433	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.01	OrthoFinder output from all 47 species
Cba_g67462	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000241.57	No alias	Enzyme classification.EC_3 hydrolases.EC_3.5 hydrolase...	0.02	OrthoFinder output from all 47 species
Dac_g12652	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.03	OrthoFinder output from all 47 species
GSVIVT01003433001	GCH, ATGCH, RFD1, ATRIBA1	Coenzyme metabolism.FMN/FAD biosynthesis.bifunctional...	0.02	OrthoFinder output from all 47 species
Gb_31656	GCH, ATGCH, RFD1, ATRIBA1	bifunctional GTP cyclohydrolase II (RibA) and DHBP...	0.03	OrthoFinder output from all 47 species
Len_g07419	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.01	OrthoFinder output from all 47 species
MA_10426568g0010	No alias	Probable bifunctional riboflavin biosynthesis protein...	0.02	OrthoFinder output from all 47 species
Nbi_g04325	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.02	OrthoFinder output from all 47 species
Ppi_g29313	GCH, ATGCH, RFD1, ATRIBA1	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.02	OrthoFinder output from all 47 species
Solyc11g010300.2.1	GCH, ATGCH,...	bifunctional GTP cyclohydrolase II (RibA) and DHBP...	0.02	OrthoFinder output from all 47 species
Solyc11g073160.3.1	Solyc11g073160	Monofunctional riboflavin biosynthesis protein RIBA 3,...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006766	vitamin metabolic process	None	Extended
BP	GO:0006767	water-soluble vitamin metabolic process	None	Extended
BP	GO:0006771	riboflavin metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009110	vitamin biosynthetic process	None	Extended
BP	GO:0009231	riboflavin biosynthetic process	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042364	water-soluble vitamin biosynthetic process	None	Extended
BP	GO:0042726	flavin-containing compound metabolic process	None	Extended
BP	GO:0042727	flavin-containing compound biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004325	ferrochelatase activity	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0006783	heme biosynthetic process	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0042168	heme metabolic process	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032677	GTP_cyclohydro_II	301	464
IPR000422	DHBP_synthase_RibB	89	282

External Links

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Cre14.g620350 (GCH, ATGCH, RFD1, ATRIBA1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation