Cre13.g568700 (TGH)

Aliases : TGH

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.miRNA biogenesis.DCL1-HYL1 miRNA biogenesis complex.TOUGH component

Gene families : OG0004570 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004570_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre13.g568700

Target	Alias	Description	ECC score	Gene Family Method
Ala_g12092	TGH	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.02	OrthoFinder output from all 47 species
Als_g01945	TGH	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.01	OrthoFinder output from all 47 species
Ceric.03G041500.1	TGH, Ceric.03G041500	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.02	OrthoFinder output from all 47 species
GSVIVT01008206001	TGH	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder output from all 47 species
LOC_Os06g29400.1	TGH, LOC_Os06g29400	component TOUGH of DCL1-HYL1 miRNA biogenesis complex	0.01	OrthoFinder output from all 47 species
Lfl_g10031	TGH	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.01	OrthoFinder output from all 47 species
Pir_g10423	TGH	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.01	OrthoFinder output from all 47 species
Pnu_g07723	TGH	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.02	OrthoFinder output from all 47 species
Tin_g11519	TGH	component *(TOUGH) of DCL1-HYL1 miRNA biogenesis complex...	0.02	OrthoFinder output from all 47 species
Zm00001e036975_P003	TGH, Zm00001e036975	component TOUGH of DCL1-HYL1 miRNA biogenesis complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003684	damaged DNA binding	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011666	DUF1604	40	114

External Links

No external refs found!